Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UTU	42550	2024-12-30	2023-10-31	3.0	2.25	2.97	2.2	0.006	0.97	1.0	0.05	18.78	0.01	1.969	5.30	1.50	3.7	96.1	0.2	-0.42	0.57	0.83	3.42	2.2	0.003	0.61	0.0	0.04	17.66	0.00	1.977	4.33	2.32	3.5	96.5	0.0	0.89	0.46	0.57	0.83	3.14	13615	1709	9	1	7	0	0	logfile
✔	8WYS	37937	2024-12-27	2023-10-31	3.41	3.65	3.43	3.6	0.005	0.92	0.0	0.06	17.49	0.01	2.025	6.74	0.98	7.0	93.0	0.0	-3.17	0.56	0.77	0.84	3.6	0.005	0.71	0.0	0.05	17.48	0.00	2.219	11.63	3.50	8.6	91.4	0.0	-1.92	0.94	0.56	0.80	1.32	6340	805	8	0	6	0	0	logfile
✔	8WYH	37928	2024-12-26	2023-10-31	3.0	3.17	3.03	3.1	0.013	1.86	3.0	0.11	24.31	0.05	2.200	41.88	35.11	24.6	62.8	12.5	-7.18	0.62	0.67	1.90	3.1	0.004	0.95	1.0	0.04	19.01	0.01	2.074	11.87	3.43	9.0	90.5	0.5	-2.52	3.61	0.66	0.69	2.22	38852	4880	6	0	0	0	0	logfile
✔	8QZX	18784	2024-12-29	2023-10-30	3.01	3.26	3.15	3.3	0.015	1.92	8.0	0.13	16.90	0.01	2.405	9.74	7.06	3.4	96.5	0.1	1.06	0.63	0.70	2.32	3.3	0.003	0.62	0.0	0.04	16.25	0.00	2.424	9.01	2.89	1.9	98.1	0.0	0.43	0.71	0.64	0.74	2.03	11708	1464	9	0	7	0	0	logfile
✔	8WY4	37915	2024-12-31	2023-10-30	2.81	2.99	2.90	3.0	0.006	1.06	0.0	0.06	15.32	0.01	2.368	2.51	0.00	4.3	95.7	0.0	-3.49	0.69	0.76	2.56	3.0	0.004	0.74	0.0	0.05	17.62	0.00	2.477	5.00	1.87	5.1	94.9	0.0	0.16	0.52	0.69	0.79	2.37	14864	1804	8	0	4	0	0	logfile
✔	8UT6	42531	2024-12-30	2023-10-30	2.8	3.01	2.85	3.0	0.006	0.95	0.0	0.05	13.95	0.01	2.085	2.86	0.00	2.0	98.0	0.0	0.42	0.60	0.79	4.37	3.0	0.005	0.69	0.0	0.05	15.14	0.00	2.407	6.94	1.57	4.1	95.9	0.0	-0.37	1.10	0.61	0.80	4.45	13046	1460	11	0	257	0	0	logfile
✔	8UT8	42533	2024-12-30	2023-10-30	3.2	3.53	3.40	3.5	0.007	1.15	0.0	0.06	13.81	0.01	2.087	3.28	0.00	3.0	97.0	0.0	0.10	0.66	0.76	2.65	3.6	0.004	0.71	0.0	0.04	15.60	0.00	2.438	10.10	2.77	4.6	95.3	0.1	-0.61	0.59	0.68	0.78	2.56	12707	1450	17	0	249	0	0	logfile
✔	8WY5	37916	2024-12-31	2023-10-30	3.12	3.34	3.15	3.4	0.006	1.18	1.0	0.07	18.38	0.01	2.380	2.95	0.18	5.0	94.5	0.5	-4.06	0.61	0.72	1.90	3.4	0.003	0.69	0.0	0.05	19.58	0.00	2.363	8.65	1.35	5.7	93.9	0.3	-1.15	1.03	0.65	0.76	1.98	16038	1770	12	76	4	0	0	logfile
✔	8WY0	37914	2024-12-27	2023-10-30	3.8	4.17	3.79	4.1	0.003	0.71	0.0	0.04	17.42	0.00	2.142	14.51	1.16	7.9	92.1	0.0	-1.58	0.50	0.67	1.59	4.1	0.003	0.83	0.0	0.04	17.82	0.00	2.540	11.10	6.76	7.2	92.8	0.0	-0.61	0.64	0.61	0.75	1.38	4656	587	9	0	1	0	0	logfile
✔	8UT9	42534	2024-12-30	2023-10-30	3.3	3.58	3.40	3.6	0.007	1.16	0.0	0.06	14.13	0.01	1.682	5.53	0.00	3.0	97.0	0.0	0.24	0.66	0.77	2.80	3.6	0.005	1.00	0.0	0.05	15.48	0.00	1.947	9.48	2.85	4.0	96.0	0.0	-0.53	0.46	0.68	0.80	2.26	12707	1450	17	0	249	0	0	logfile
✔	8UT7	42532	2024-12-30	2023-10-30	2.7	2.95	2.77	2.9	0.006	1.10	0.0	0.06	12.34	0.01	2.173	2.54	0.00	1.9	98.1	0.0	0.80	0.64	0.84	5.63	2.9	0.005	0.63	0.0	0.04	14.25	0.00	2.430	5.08	1.17	2.8	97.2	0.0	-0.12	0.82	0.68	0.86	4.95	13046	1460	11	0	257	0	0	logfile
✔	8WXF	37905	2024-12-31	2023-10-29	4.0	4.27	4.10	4.2	0.003	0.71	0.0	0.05	17.29	0.01	2.188	15.21	0.75	4.8	95.1	0.1	-1.25	0.74	0.80	—	4.2	0.003	0.65	0.0	0.04	17.58	0.00	2.316	11.54	3.81	4.4	95.4	0.1	-0.45	0.37	0.78	0.81	—	16380	2190	3	0	0	0	0	logfile
✔	8USP	42510	2024-12-28	2023-10-28	3.3	4.27	—	4.0	0.003	0.66	8.0	0.04	14.46	0.00	1.875	7.99	0.15	3.0	97.0	0.0	1.03	0.80	0.79	0.78	4.0	0.003	0.65	0.0	0.04	16.28	0.00	2.432	8.21	1.85	3.2	96.8	0.0	1.36	0.46	0.83	0.83	0.99	47406	5892	6	0	0	0	0	logfile
✔	8WXE	37904	2024-12-27	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.89	0.0	0.04	18.41	0.00	2.476	12.77	8.76	4.8	95.2	0.0	-0.30	0.94	0.56	0.74	—	4388	548	9	0	1	0	0	logfile
✔	8WX4	37900	2024-12-28	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	2.031	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.003	0.55	0.0	0.04	15.29	0.00	2.588	5.19	2.30	2.7	97.3	0.0	1.35	1.31	0.57	0.82	2.50	7512	976	6	0	0	0	0	logfile
✔	8WX1	37897	2024-12-27	2023-10-27	3.64	3.87	3.67	4.0	0.003	0.74	0.0	0.04	13.80	0.00	2.297	9.47	0.00	4.7	94.9	0.4	0.07	0.51	0.72	0.89	3.9	0.003	0.69	0.0	0.04	16.73	0.01	2.477	12.00	3.83	6.3	93.5	0.2	2.42	0.68	0.54	0.76	1.69	3926	500	1	0	0	0	0	logfile
✔	8WX2	37898	2024-12-27	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.033	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.85	0.0	0.05	16.35	0.01	2.531	11.43	2.99	7.6	92.4	0.0	0.95	0.63	0.59	0.74	0.53	6800	880	2	0	0	0	0	logfile
✔	8WX0	37896	2024-12-30	2023-10-27	3.7	3.44	3.68	3.6	0.003	0.58	0.0	0.05	18.73	0.00	2.207	10.32	0.57	4.5	95.3	0.2	0.35	0.65	0.82	2.04	3.6	0.005	0.68	0.0	0.05	18.84	0.00	2.464	8.36	6.75	5.1	94.8	0.2	0.20	0.22	0.68	0.83	1.75	13672	1782	7	15	0	0	0	logfile
✔	8WX3	37899	2024-12-28	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.17	0.00	2.587	5.73	2.56	3.1	96.7	0.2	1.65	1.81	0.56	0.84	2.50	7498	974	2	0	0	0	0	logfile
✔	8WX5	37901	2024-12-27	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.004	0.76	0.0	0.04	16.95	0.00	2.543	12.05	2.99	6.2	93.8	0.0	0.72	1.01	0.52	0.81	1.19	3857	504	2	0	0	0	0	logfile

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