Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WWi	37889	2024-12-28	2023-10-25	3.43	3.62	3.55	3.6	0.002	0.41	0.0	0.04	8.18	0.00	2.085	7.35	0.95	1.7	98.3	0.0	0.41	0.60	0.67	1.27	3.6	0.004	0.75	0.0	0.05	14.21	0.00	2.384	12.70	3.80	3.4	96.6	0.0	0.49	2.31	0.61	0.70	0.56	8803	1143	5	0	0	0	0	logfile
✔	8UR5	42482	2024-12-27	2023-10-25	3.7	3.90	2.45	4.0	0.011	1.45	0.0	0.09	9.30	0.01	2.011	6.45	1.71	4.3	95.2	0.4	-0.71	0.66	0.72	3.62	3.9	0.002	0.68	0.0	0.04	12.65	0.00	2.614	4.70	2.85	2.9	96.4	0.7	-0.28	1.63	0.68	0.79	3.19	4989	696	6	0	12	0	0	logfile
✔	8WWM	37893	2024-12-28	2023-10-25	2.81	3.07	2.97	3.0	0.004	0.48	0.0	0.04	9.44	0.00	2.218	5.91	0.93	1.7	98.3	0.0	0.54	0.64	0.80	4.16	3.0	0.003	0.60	0.0	0.04	14.46	0.00	2.595	7.49	2.89	2.0	98.0	0.0	1.05	1.60	0.60	0.77	3.60	8963	1160	6	0	0	0	0	logfile
✔	8QYD	18751	2024-12-31	2023-10-25	2.67	2.91	2.74	2.9	0.008	1.36	1.0	0.05	18.41	0.01	2.152	8.44	0.12	1.7	98.3	0.0	3.25	0.67	0.86	3.31	2.9	0.003	0.52	0.0	0.04	18.19	0.00	2.203	6.88	1.33	2.0	98.0	0.0	3.71	0.95	0.67	0.87	2.90	16150	1892	19	0	16	313	0	logfile
✔	8QY7	18747	2024-12-28	2023-10-25	2.66	2.97	2.74	2.9	0.018	1.71	1.0	0.05	14.57	0.01	1.791	15.44	0.00	3.3	96.7	0.0	0.62	0.72	0.85	4.44	2.9	0.003	0.56	0.0	0.04	17.60	0.01	2.562	5.52	1.93	3.2	96.8	0.0	1.21	0.40	0.62	0.84	3.96	7167	893	1	0	0	0	0	logfile
✔	8WWJ	37890	2024-12-28	2023-10-25	3.03	3.30	3.24	3.2	0.003	0.43	0.0	0.04	8.31	0.00	2.118	5.67	0.63	1.8	98.2	0.0	1.11	0.66	0.79	4.07	3.2	0.003	0.58	0.0	0.04	14.19	0.00	2.496	6.18	2.42	2.3	97.7	0.0	1.34	0.67	0.67	0.80	3.27	8821	1143	5	0	0	0	0	logfile
✔	8QYC	18750	2024-12-28	2023-10-25	2.75	3.04	2.85	3.1	0.002	0.44	0.0	0.04	11.07	0.00	2.161	5.15	1.29	2.6	97.4	0.0	1.17	0.63	0.83	4.58	3.0	0.003	0.53	0.0	0.04	15.44	0.00	2.506	4.46	2.57	2.8	97.2	0.0	1.32	0.91	0.59	0.81	3.96	7198	893	2	0	1	0	0	logfile
✔	8QXN	18733	2024-12-31	2023-10-24	2.98	3.14	3.09	3.1	0.003	0.61	0.0	0.05	17.34	0.00	1.867	4.09	0.07	3.9	96.1	0.0	0.87	0.68	0.73	1.57	3.1	0.003	0.63	0.0	0.04	18.13	0.00	1.883	4.40	1.54	4.4	95.6	0.1	1.04	1.76	0.76	0.83	2.04	14461	1760	8	0	22	0	0	logfile
✔	8QXM	18732	2024-12-31	2023-10-24	2.94	3.04	3.00	3.0	0.003	0.63	0.0	0.04	17.60	0.01	1.812	2.88	0.00	4.1	95.9	0.0	0.06	0.77	0.83	2.81	3.0	0.004	0.64	0.0	0.05	18.03	0.00	1.783	3.44	2.05	4.1	95.9	0.0	0.47	1.15	0.77	0.85	2.73	14658	1784	8	0	24	0	0	logfile
✔	8QXK	18730	2024-12-31	2023-10-24	2.66	2.75	2.70	2.7	0.003	0.74	0.0	0.05	17.51	0.00	1.965	3.56	0.00	2.4	97.6	0.0	-0.20	0.76	0.81	4.69	2.7	0.003	0.61	0.0	0.04	17.73	0.00	1.953	3.47	2.04	2.2	97.7	0.1	0.67	0.36	0.75	0.85	4.20	15323	1832	8	0	28	0	0	logfile
✔	8WVX	37875	2024-12-29	2023-10-24	3.32	3.54	3.32	3.5	0.022	2.06	6.0	0.07	8.64	0.01	1.179	15.41	2.48	8.0	92.0	0.0	-2.44	0.56	0.55	1.51	3.5	0.003	0.73	0.0	0.04	13.83	0.00	2.371	5.23	3.15	6.0	94.0	0.1	-0.23	1.49	0.69	0.77	2.26	11460	1655	4	0	0	0	0	logfile
✔	8WVW	37874	2024-12-27	2023-10-24	3.53	3.61	3.38	3.6	0.019	1.91	13.0	0.08	17.27	0.01	2.124	18.80	3.34	8.9	91.0	0.1	-3.16	0.67	0.84	0.85	3.6	0.004	0.69	0.0	0.04	16.73	0.00	2.575	4.72	2.87	5.8	94.2	0.0	-1.90	1.36	0.70	0.85	1.44	5594	722	1	0	0	0	0	logfile
✔	8WVY	37876	2024-12-28	2023-10-24	3.29	2.32	—	3.2	0.013	1.34	0.0	0.05	8.91	0.01	2.054	14.51	2.80	5.9	94.1	0.0	-1.42	0.71	0.66	2.58	3.2	0.004	0.71	0.0	0.04	13.99	0.00	2.558	5.32	2.93	6.7	93.3	0.0	-1.08	0.79	0.80	0.81	2.53	7241	930	3	0	0	0	0	logfile
✔	8QXA	18716	2024-12-27	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.004	0.84	0.0	0.04	14.32	0.00	2.541	15.94	0.00	8.5	91.5	0.0	-4.42	1.43	0.44	0.70	—	3696	540	12	0	0	0	0	logfile
✔	8WVV	37873	2024-12-27	2023-10-24	3.35	2.72	3.57	3.5	0.007	1.26	13.0	0.08	17.09	0.01	1.693	25.67	1.28	7.7	92.3	0.0	-2.78	0.74	0.74	0.66	3.5	0.003	0.72	0.0	0.04	17.73	0.00	2.596	14.80	3.19	5.7	94.3	0.0	-1.55	1.06	0.76	0.78	0.93	5596	718	1	0	0	0	0	logfile
✔	8WVU	37869	2024-12-28	2023-10-24	3.61	2.50	—	2.3	0.012	1.32	3.0	0.06	8.44	0.01	1.989	17.55	2.68	6.0	94.0	0.0	-1.23	0.71	0.62	2.88	2.2	0.003	0.70	0.0	0.04	14.35	0.00	2.550	7.29	2.07	6.8	93.2	0.0	-1.06	1.86	0.75	0.74	2.43	7427	972	3	0	0	0	0	logfile
✔	8QX9	18715	2024-12-27	2023-10-24	3.76	3.94	3.62	4.3	0.014	2.17	0.0	0.11	18.79	0.01	2.496	2.80	0.00	2.3	97.7	0.0	-4.75	0.50	0.70	3.13	4.3	0.004	0.93	0.0	0.04	19.90	0.00	2.530	16.78	2.59	3.5	96.5	0.0	-4.76	2.17	0.48	0.75	3.84	3696	540	12	0	0	0	0	logfile
✔	8WW2	37881	2024-12-28	2023-10-24	2.79	3.00	2.84	3.1	0.004	0.71	0.0	0.05	13.76	0.00	1.809	4.15	0.00	3.5	96.5	0.0	0.09	0.66	0.80	2.96	3.1	0.002	0.52	0.0	0.04	15.70	0.00	2.596	2.40	1.11	2.5	97.5	0.0	1.48	0.34	0.64	0.81	2.39	7792	1020	6	0	3	2	0	logfile
✔	8QXo	18734	2024-12-31	2023-10-24	3.43	3.56	3.52	3.5	0.003	0.63	0.0	0.04	16.43	0.01	1.759	4.94	0.13	3.0	96.9	0.1	0.60	0.64	0.70	1.63	3.5	0.003	0.60	0.0	0.04	17.81	0.00	1.896	4.62	2.43	4.8	95.2	0.0	0.77	0.88	0.77	0.82	1.94	14291	1747	8	0	14	0	0	logfile
✔	8QXB	18717	2024-12-27	2023-10-24	3.86	3.89	3.45	4.3	0.014	2.28	0.0	0.11	18.19	0.01	2.508	1.77	0.00	2.3	97.7	0.0	-3.90	0.53	0.71	2.65	4.2	0.006	0.92	0.0	0.04	18.74	0.00	2.560	14.73	4.41	6.1	93.9	0.0	-4.89	3.44	0.54	0.78	2.55	5544	810	18	0	0	0	0	logfile

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