Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8URU	42501	2024-12-28	2023-10-26	3.7	3.90	3.70	3.9	0.005	0.98	1.0	0.05	21.44	0.01	2.058	21.18	3.21	10.9	88.1	0.9	-2.97	0.70	0.74	1.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8895	1001	6	43	1	0	0	logfile
✔	8WWP	37895	2024-12-30	2023-10-26	3.12	3.73	3.38	3.6	0.003	0.51	0.0	0.04	17.17	0.00	2.262	9.97	0.07	4.3	95.5	0.2	0.23	0.74	0.72	0.91	3.6	0.004	0.65	0.0	0.05	17.73	0.00	2.470	10.88	7.25	5.0	95.0	0.0	0.28	0.95	0.68	0.69	1.10	13125	1749	3	0	0	0	0	logfile
✔	8QYY	18766	2024-12-31	2023-10-26	2.56	2.85	2.76	2.9	0.009	1.40	0.0	0.05	18.64	0.00	2.153	8.37	0.00	1.9	98.1	0.0	2.90	0.69	0.84	3.51	2.9	0.003	0.52	0.0	0.04	18.24	0.00	2.209	8.20	1.12	1.5	98.5	0.0	3.30	1.34	0.66	0.84	3.32	14829	1717	19	0	15	313	0	logfile
✔	8QYK	18756	2024-12-31	2023-10-26	2.07	2.21	2.13	2.2	0.008	1.37	0.0	0.05	18.96	0.01	2.122	7.71	0.19	1.4	98.6	0.0	3.54	0.69	0.85	4.06	2.2	0.003	0.56	0.0	0.04	18.22	0.00	2.236	7.19	0.99	1.5	98.5	0.0	3.51	0.93	0.68	0.86	4.22	16182	1817	19	0	15	866	0	logfile
✔	8QYH	18754	2024-12-31	2023-10-26	2.4	2.62	2.47	2.7	0.008	1.03	0.0	0.04	17.93	0.00	2.177	8.50	0.12	1.4	98.6	0.0	3.24	0.65	0.85	3.41	2.7	0.003	0.51	0.0	0.04	17.49	0.00	2.386	7.25	0.92	1.0	99.0	0.0	3.56	0.34	0.68	0.87	3.19	15925	1837	19	0	10	484	0	logfile
✔	8QYV	18764	2024-12-26	2023-10-26	3.5	3.92	3.78	3.3	0.003	0.64	0.0	0.04	21.47	0.00	1.982	12.22	0.35	5.7	94.0	0.3	-0.25	0.87	0.74	0.57	3.3	0.003	0.70	0.0	0.04	21.69	0.00	1.704	10.23	2.95	5.1	94.7	0.2	-0.02	1.09	0.90	0.82	1.05	41998	4795	28	236	20	0	0	logfile
✔	8URQ	42497	2024-12-28	2023-10-26	3.3	3.57	3.32	3.6	0.017	1.25	1.0	0.06	21.28	0.01	1.769	18.16	4.61	10.8	88.9	0.3	-3.76	0.71	0.71	1.02	3.6	0.005	0.75	0.0	0.04	20.87	0.00	1.835	10.54	4.94	12.7	87.3	0.0	-3.06	0.52	0.72	0.74	0.97	8569	993	6	31	1	0	0	logfile
✔	8QZ0	18769	2024-12-26	2023-10-26	3.8	4.34	3.91	2.6	0.003	0.68	0.0	0.04	21.94	0.00	1.943	16.33	0.43	6.1	93.6	0.3	-0.49	0.88	0.78	0.69	2.7	0.005	0.74	0.0	0.04	22.31	0.00	1.820	16.79	5.06	7.3	92.4	0.3	-0.73	0.33	0.88	0.79	0.62	44167	5092	31	226	20	0	0	logfile
✔	8QYS	18761	2024-12-29	2023-10-26	3.89	4.28	3.89	4.1	0.003	0.57	2.0	0.04	14.29	0.00	2.222	9.04	0.00	10.1	89.9	0.0	-1.10	0.85	0.85	1.27	4.1	0.003	0.62	0.0	0.04	16.08	0.00	2.401	7.30	2.05	7.9	92.1	0.0	-0.85	0.30	0.85	0.85	1.08	57862	7588	34	0	0	0	0	logfile
✔	8URT	42500	2024-12-27	2023-10-26	3.8	3.27	3.04	3.3	0.008	1.44	0.0	0.04	21.44	0.00	1.995	5.02	1.90	2.7	97.3	0.0	2.20	0.54	0.76	2.55	3.3	0.003	0.51	0.0	0.04	17.34	0.00	1.999	4.05	2.19	2.3	97.7	0.0	2.63	0.23	0.62	0.80	2.62	6622	774	6	0	14	2	0	logfile
✔	8WWL	37892	2024-12-28	2023-10-25	2.78	2.95	2.86	2.9	0.002	0.42	0.0	0.04	8.90	0.00	2.135	5.97	0.83	1.6	98.4	0.0	0.49	0.67	0.81	4.70	2.9	0.003	0.56	0.0	0.04	13.79	0.00	2.557	5.80	1.86	2.0	98.0	0.0	1.32	0.47	0.67	0.81	3.20	8964	1160	6	0	0	0	0	logfile
✔	8WWN	37894	2024-12-28	2023-10-25	2.65	2.83	2.75	2.8	0.002	0.44	0.0	0.04	9.19	0.00	2.180	5.02	0.62	1.2	98.8	0.0	0.87	0.71	0.83	4.98	2.8	0.004	0.59	0.0	0.04	14.11	0.00	2.510	5.24	2.90	1.8	98.2	0.0	1.23	1.16	0.70	0.84	3.93	8960	1160	6	0	0	0	0	logfile
✔	8URE	42491	2024-12-28	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.8	0.004	0.53	0.0	0.03	4.26	0.00	2.616	0.83	0.00	3.0	97.0	0.0	0.95	0.65	0.81	0.82	—	8896	1792	8	0	0	0	0	logfile
✔	8QYC	18750	2024-12-28	2023-10-25	2.75	3.04	2.85	3.1	0.002	0.44	0.0	0.04	11.07	0.00	2.161	5.15	1.29	2.6	97.4	0.0	1.17	0.63	0.83	4.58	3.0	0.003	0.53	0.0	0.04	15.44	0.00	2.506	4.46	2.57	2.8	97.2	0.0	1.32	0.91	0.59	0.81	3.96	7198	893	2	0	1	0	0	logfile
✔	8WWM	37893	2024-12-28	2023-10-25	2.81	3.07	2.97	3.0	0.004	0.48	0.0	0.04	9.44	0.00	2.218	5.91	0.93	1.7	98.3	0.0	0.54	0.64	0.80	4.16	3.0	0.003	0.60	0.0	0.04	14.46	0.00	2.595	7.49	2.89	2.0	98.0	0.0	1.05	1.60	0.60	0.77	3.60	8963	1160	6	0	0	0	0	logfile
✔	8QY7	18747	2024-12-28	2023-10-25	2.66	2.97	2.74	2.9	0.018	1.71	1.0	0.05	14.57	0.01	1.791	15.44	0.00	3.3	96.7	0.0	0.62	0.72	0.85	4.44	2.9	0.003	0.56	0.0	0.04	17.60	0.01	2.562	5.52	1.93	3.2	96.8	0.0	1.21	0.40	0.62	0.84	3.96	7167	893	1	0	0	0	0	logfile
✔	8QYD	18751	2024-12-31	2023-10-25	2.67	2.91	2.74	2.9	0.008	1.36	1.0	0.05	18.41	0.01	2.152	8.44	0.12	1.7	98.3	0.0	3.25	0.67	0.86	3.31	2.9	0.003	0.52	0.0	0.04	18.19	0.00	2.203	6.88	1.33	2.0	98.0	0.0	3.71	0.95	0.67	0.87	2.90	16150	1892	19	0	16	313	0	logfile
✔	8WWi	37889	2024-12-28	2023-10-25	3.43	3.62	3.55	3.6	0.002	0.41	0.0	0.04	8.18	0.00	2.085	7.35	0.95	1.7	98.3	0.0	0.41	0.60	0.67	1.27	3.6	0.004	0.75	0.0	0.05	14.21	0.00	2.384	12.70	3.80	3.4	96.6	0.0	0.49	2.31	0.61	0.70	0.56	8803	1143	5	0	0	0	0	logfile
✔	8WWH	37888	2024-12-28	2023-10-25	2.84	3.06	3.01	3.0	0.003	0.42	0.0	0.04	8.13	0.00	2.156	4.75	0.63	1.8	98.2	0.0	0.92	0.64	0.81	3.95	3.0	0.002	0.53	0.0	0.04	14.11	0.00	2.545	5.90	1.89	1.9	98.1	0.0	1.69	0.54	0.63	0.80	3.09	8821	1143	5	0	0	0	0	logfile
✔	8UR3	42480	2024-12-29	2023-10-25	2.61	3.41	2.64	3.1	0.003	0.51	0.0	0.04	13.47	0.00	2.253	4.15	0.00	2.7	97.3	0.0	-0.63	0.86	0.85	3.65	3.1	0.002	0.49	0.0	0.04	15.10	0.00	2.499	5.77	0.87	2.8	97.2	0.0	1.07	0.54	0.87	0.86	3.24	9376	1158	2	0	0	0	0	logfile

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