Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Uo2	42425	2024-12-27	2023-10-19	3.6	4.02	3.83	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.46	0.0	0.04	14.64	0.00	2.501	3.02	1.00	1.5	98.5	0.0	1.95	0.93	0.64	0.81	3.01	6504	956	6	0	2	0	0	logfile
✔	8WU1	37849	2024-12-28	2023-10-19	3.2	3.40	3.17	3.4	0.008	0.62	0.0	0.04	11.92	0.00	2.208	7.36	0.00	4.5	95.5	0.0	-0.58	0.66	0.79	3.60	3.4	0.002	0.59	0.0	0.04	13.94	0.00	2.582	6.36	1.30	2.2	97.8	0.0	0.29	0.36	0.65	0.78	3.10	7250	1014	5	0	1	0	0	logfile
✘	8UNS	42415	2024-12-27	2023-10-19	3.4	3.73	3.46	3.7	0.004	0.77	0.0	0.05	14.48	0.00	2.332	3.61	0.00	2.1	97.9	0.0	1.05	0.65	0.86	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6683	916	6	0	2	1	0	logfile
✔	8Uo4	42427	2024-12-27	2023-10-19	4.0	4.28	3.99	4.2	0.004	0.72	0.0	0.04	12.00	0.00	2.322	5.46	0.00	3.2	96.8	0.0	-0.04	0.69	0.80	—	4.2	0.006	0.67	0.0	0.04	13.55	0.00	2.514	4.96	3.96	5.6	94.4	0.0	0.02	0.96	0.69	0.81	—	5702	910	6	0	3	0	0	logfile
✔	8UoA	42432	2024-12-27	2023-10-19	3.8	2.62	3.85	2.1	0.009	1.53	0.0	0.08	22.40	0.01	2.349	7.65	0.00	6.6	93.4	0.0	-1.49	0.50	0.38	1.36	2.1	0.004	0.88	0.0	0.05	13.84	0.00	2.501	11.67	3.70	10.9	89.1	0.0	-2.14	1.17	0.64	0.61	2.33	1440	215	5	0	7	0	0	logfile
✔	8UNT	42416	2024-12-27	2023-10-19	3.4	3.76	3.55	3.7	0.005	0.81	0.0	0.05	14.50	0.00	2.232	5.13	0.32	1.4	98.6	0.0	1.29	0.64	0.84	2.66	3.7	0.002	0.49	0.0	0.04	15.18	0.00	2.511	2.72	2.43	1.2	98.8	0.0	1.64	0.38	0.65	0.85	2.30	6712	913	6	0	2	1	0	logfile
✔	8QVW	18674	2024-12-27	2023-10-18	3.0	3.25	3.07	3.2	0.003	0.60	0.0	0.04	18.02	0.00	2.155	14.69	0.23	4.3	95.7	0.0	1.25	0.75	0.76	1.70	3.2	0.004	0.72	0.0	0.04	18.61	0.00	2.476	12.28	3.00	3.9	96.1	0.0	1.23	0.47	0.73	0.76	2.03	3918	492	2	0	0	0	0	logfile
✔	8WTD	37832	2024-12-27	2023-10-18	3.06	3.33	3.05	3.4	0.005	0.90	7.0	0.05	18.48	0.00	2.232	8.87	0.72	5.3	93.9	0.8	-0.02	0.53	0.80	1.75	3.4	0.003	0.58	0.0	0.04	17.80	0.00	2.590	5.54	2.31	4.7	95.2	0.1	0.33	0.97	0.59	0.84	2.66	6456	790	3	0	4	0	0	logfile
✔	8UMX	42387	2024-12-28	2023-10-18	4.0	5.63	3.86	4.0	0.003	0.77	0.0	0.04	17.12	0.00	2.173	17.66	0.50	5.0	94.9	0.1	-0.01	0.52	0.81	—	4.0	0.003	0.80	0.0	0.04	17.62	0.00	2.487	16.63	3.65	4.8	95.1	0.1	0.23	1.74	0.54	0.85	—	7166	906	6	0	0	0	0	logfile
✔	8WT9	37830	2024-12-31	2023-10-18	2.7	3.37	2.80	3.1	0.008	1.36	0.0	0.08	20.16	0.00	1.607	0.58	0.98	0.8	99.2	0.0	-1.58	0.89	0.89	4.37	3.2	0.003	0.52	0.0	0.03	20.85	0.00	1.975	3.57	0.39	0.5	99.5	0.0	2.78	1.18	0.84	0.88	3.55	14982	1258	13	239	2	2	0	logfile
✔	8QVX	18677	2024-12-27	2023-10-18	2.7	3.42	2.68	3.2	0.004	0.68	0.0	0.04	17.62	0.00	2.195	14.71	0.46	4.7	95.1	0.2	1.30	0.71	0.71	1.07	3.2	0.004	0.68	0.0	0.04	18.22	0.00	2.263	10.69	4.58	4.5	95.3	0.2	1.66	0.51	0.69	0.69	0.54	3948	496	2	0	0	0	0	logfile
✔	8WT8	37829	2024-12-31	2023-10-18	2.9	3.51	2.97	3.3	0.008	1.33	0.0	0.08	20.48	0.00	1.611	0.18	0.59	1.9	98.1	0.0	-2.17	0.89	0.88	2.68	3.3	0.003	0.55	0.0	0.03	21.13	0.00	1.971	4.09	0.79	1.2	98.8	0.0	2.50	0.47	0.87	0.89	1.86	14916	1246	11	239	1	0	0	logfile
✔	8WT7	37828	2024-12-31	2023-10-18	2.7	3.41	2.76	3.1	0.008	1.31	0.0	0.08	19.85	0.00	1.608	0.25	0.49	0.7	99.3	0.0	-1.68	0.88	0.88	3.73	3.1	0.003	0.50	0.0	0.03	20.56	0.00	1.993	4.18	0.49	0.6	99.4	0.0	3.09	0.44	0.86	0.86	3.08	14846	1246	14	239	2	4	0	logfile
✔	8WT6	37827	2024-12-31	2023-10-18	2.5	3.24	2.60	3.0	0.008	1.36	0.0	0.08	19.93	0.01	1.607	0.40	0.40	0.7	99.3	0.0	-1.54	0.86	0.90	5.47	3.0	0.003	0.52	0.0	0.04	20.70	0.00	1.869	3.66	0.30	0.5	99.5	0.0	2.82	0.43	0.81	0.85	3.90	14743	1246	15	233	2	4	0	logfile
✔	8UN7	42394	2024-12-30	2023-10-18	3.55	3.01	3.15	3.2	0.004	0.75	4.0	0.05	18.14	0.00	1.628	6.45	4.72	12.7	86.4	0.9	-4.64	0.71	0.83	2.45	3.2	0.003	0.62	0.0	0.05	17.82	0.00	2.274	4.30	5.07	15.1	84.7	0.2	-4.38	0.29	0.74	0.83	2.46	14296	1752	16	0	24	0	0	logfile
✔	8QW4	18680	2024-12-27	2023-10-18	2.9	3.70	2.97	3.7	0.007	1.10	1.0	0.06	13.20	0.01	2.091	17.12	0.26	14.0	86.0	0.0	-3.29	0.56	0.64	3.16	3.7	0.004	1.01	0.0	0.05	17.07	0.01	2.489	14.55	3.43	9.3	90.7	0.0	-2.18	1.24	0.54	0.67	1.48	3479	434	2	0	0	0	0	logfile
✔	8WST	37824	2024-12-28	2023-10-17	2.4	2.03	2.39	2.4	0.002	0.45	1.0	0.04	8.87	0.00	2.158	4.97	0.22	3.1	96.9	0.0	2.41	0.64	0.75	3.44	2.4	0.003	0.61	0.0	0.04	14.84	0.00	2.523	5.22	2.77	4.2	95.7	0.1	1.09	1.45	0.64	0.80	3.78	8286	1055	6	0	0	0	0	logfile
✔	8WSS	37823	2024-12-28	2023-10-17	3.01	2.86	2.95	3.1	0.002	0.46	0.0	0.04	9.95	0.00	2.082	6.49	0.43	2.3	97.7	0.0	1.40	0.71	0.83	2.49	3.1	0.004	0.60	0.0	0.04	14.47	0.00	2.466	7.52	3.41	3.4	96.5	0.1	0.73	0.64	0.72	0.87	3.09	8797	1143	6	0	0	0	0	logfile
✘	8WSR	37822	2024-12-29	2023-10-17	2.99	2.42	3.08	2.2	0.005	0.82	2.0	0.06	17.39	0.01	1.124	6.73	1.45	2.7	97.3	0.0	-0.22	0.83	0.81	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6475	789	4	0	8	0	0	logfile
✔	8UMC	42375	2024-12-28	2023-10-17	2.5	2.12	2.52	1.9	0.005	0.68	0.0	0.05	17.53	0.01	2.045	9.69	1.16	2.9	96.9	0.1	-0.80	0.82	0.81	3.65	1.9	0.003	0.65	0.0	0.04	18.05	0.01	2.163	9.27	3.49	2.9	97.1	0.0	0.19	0.39	0.81	0.81	3.16	7198	890	6	0	2	0	0	logfile

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