Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UMF	42378	2024-12-31	2023-10-17	2.9	3.41	2.94	3.2	0.005	0.80	0.0	0.05	19.05	0.01	2.087	4.93	0.00	3.1	96.9	0.0	-1.20	0.84	0.85	3.87	3.2	0.003	0.57	0.0	0.04	19.76	0.00	1.976	7.11	1.14	2.4	97.6	0.0	1.18	0.41	0.82	0.89	3.15	14804	1376	7	173	7	0	0	logfile
✔	8WST	37824	2024-12-28	2023-10-17	2.4	2.03	2.39	2.4	0.002	0.45	1.0	0.04	8.87	0.00	2.158	4.97	0.22	3.1	96.9	0.0	2.41	0.64	0.75	3.44	2.4	0.003	0.61	0.0	0.04	14.84	0.00	2.523	5.22	2.77	4.2	95.7	0.1	1.09	1.45	0.64	0.80	3.78	8286	1055	6	0	0	0	0	logfile
✔	8UL9	42357	2024-12-27	2023-10-16	3.2	3.36	3.16	3.4	0.008	1.29	0.0	0.04	19.12	0.00	2.024	6.75	2.33	4.0	96.0	0.0	2.06	0.61	0.82	1.94	3.4	0.003	0.51	0.0	0.04	16.48	0.00	2.023	7.49	2.18	4.5	95.3	0.1	2.09	1.13	0.64	0.80	1.67	6674	774	5	0	14	1	0	logfile
✔	8WRL	37779	2024-12-27	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.6	0.002	0.52	0.0	0.04	17.23	0.00	2.447	6.72	3.46	3.2	96.8	0.0	0.64	0.33	0.52	0.77	1.21	6472	790	4	0	5	0	0	logfile
✔	8WRH	37776	2024-12-27	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.56	0.0	0.04	17.80	0.00	2.495	6.97	2.02	4.1	95.9	0.0	0.70	0.90	0.59	0.82	1.73	6459	790	3	0	4	0	0	logfile
✔	8WRE	37775	2024-12-27	2023-10-13	2.9	3.39	2.87	3.3	0.003	0.54	0.0	0.04	12.09	0.00	2.265	3.87	0.00	1.9	98.1	0.0	1.24	0.72	0.86	2.82	3.3	0.003	0.59	0.0	0.04	14.49	0.00	2.546	3.08	2.14	2.4	97.6	0.0	1.51	0.30	0.69	0.89	2.64	6328	829	4	0	1	0	0	logfile
✘	8WRD	37774	2024-12-27	2023-10-13	3.05	3.46	3.00	3.4	0.004	0.55	0.0	0.04	15.71	0.00	2.177	4.66	0.14	3.0	97.0	0.0	0.84	0.69	0.84	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6326	830	3	0	0	0	0	logfile
✔	8QTZ	18655	2024-12-31	2023-10-13	4.27	3.73	3.62	4.0	0.004	0.86	1.0	0.05	13.81	0.01	2.065	21.72	0.05	11.0	88.7	0.3	-3.58	0.72	0.78	—	4.0	0.003	0.83	0.0	0.05	13.82	0.01	2.353	15.02	0.05	10.3	89.5	0.1	-3.19	0.73	0.72	0.79	—	16260	2067	3	0	0	0	0	logfile
✔	8WQP	37751	2024-12-27	2023-10-12	2.4	2.23	2.33	2.3	0.002	0.53	0.0	0.05	15.80	0.00	2.156	3.18	1.91	2.9	97.1	0.0	-0.22	0.62	0.77	4.69	2.3	0.003	0.56	0.0	0.05	15.81	0.00	2.462	3.33	3.01	4.5	95.5	0.0	-0.07	0.35	0.62	0.77	4.14	6842	452	2	0	14	0	3330	logfile
✔	8QT6	18644	2024-12-27	2023-10-12	2.29	2.56	2.40	2.6	0.004	0.60	0.0	0.04	18.31	0.00	2.174	4.72	0.86	1.8	98.2	0.0	0.77	0.66	0.84	3.87	2.6	0.003	0.64	0.0	0.04	18.41	0.00	2.556	3.24	1.44	2.0	98.0	0.0	1.50	0.23	0.59	0.80	3.79	3466	399	2	0	3	63	0	logfile
✔	8QT9	18646	2024-12-27	2023-10-12	2.36	2.58	2.35	2.6	0.005	0.68	0.0	0.04	20.32	0.00	2.158	5.55	0.58	1.3	98.7	0.0	0.58	0.62	0.80	3.59	2.6	0.003	0.61	0.0	0.04	19.18	0.00	2.551	4.23	1.44	2.0	98.0	0.0	1.68	0.19	0.61	0.79	3.65	3511	399	2	0	4	64	0	logfile
✔	8QTD	18649	2024-12-27	2023-10-12	3.6	3.77	3.60	3.8	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.8	0.003	0.59	0.0	0.04	13.28	0.00	2.470	7.03	2.63	4.5	95.5	0.0	-0.16	0.89	0.56	0.80	3.16	3219	413	3	0	0	0	0	logfile
✔	8QT7	18645	2024-12-27	2023-10-12	2.2	2.42	2.27	2.4	0.009	0.96	0.0	0.04	19.30	0.00	2.169	4.96	0.86	1.8	98.2	0.0	1.00	0.61	0.80	4.04	2.4	0.003	0.61	0.0	0.04	19.31	0.00	2.498	3.79	0.86	1.8	98.2	0.0	1.70	3.68	0.60	0.79	3.77	3516	399	2	0	4	65	0	logfile
✔	8WQW	37756	2024-12-31	2023-10-12	3.27	2.51	3.28	1.9	0.005	0.70	0.0	0.05	13.42	0.01	2.125	9.31	0.10	5.2	94.8	0.0	-0.92	0.71	0.67	2.47	1.8	0.004	0.72	0.0	0.05	15.52	0.01	2.587	9.42	2.73	6.5	93.5	0.0	-0.96	1.03	0.74	0.72	2.12	8972	1174	8	0	5	0	0	logfile
✔	8WQR	37752	2024-12-29	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.003	0.67	0.0	0.05	14.07	0.00	2.580	10.26	1.61	7.0	92.9	0.1	-2.57	0.44	0.82	0.68	1.72	9681	1415	2	0	0	0	0	logfile
✔	8QTA	18647	2024-12-27	2023-10-12	2.64	2.83	2.66	2.8	0.009	0.97	0.0	0.04	20.12	0.00	2.155	7.45	1.16	2.5	97.5	0.0	-0.55	0.61	0.80	3.80	2.8	0.003	0.70	0.0	0.04	19.53	0.00	2.482	6.14	1.73	3.0	97.0	0.0	0.81	0.26	0.59	0.79	3.95	3472	399	2	0	4	27	0	logfile
✔	8QSQ	18639	2024-12-27	2023-10-11	3.7	4.53	6.42	3.8	0.002	0.46	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.004	0.77	0.0	0.04	14.41	0.00	2.498	22.89	1.58	5.0	95.0	0.0	-0.37	2.40	0.64	0.74	0.72	6512	791	3	0	6	0	0	logfile
✔	8WQD	37740	2024-12-27	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.003	0.53	0.0	0.04	16.80	0.00	2.532	9.02	2.19	6.1	93.9	0.0	0.45	0.33	0.68	0.83	1.82	5046	641	2	0	0	0	0	logfile
✔	8QSR	18640	2024-12-29	2023-10-11	2.56	2.17	2.57	2.6	0.004	0.57	0.0	0.04	10.42	0.00	2.160	4.50	0.34	1.8	98.2	0.0	1.81	0.73	0.69	2.56	2.1	0.007	0.69	0.0	0.05	13.73	0.01	2.310	8.07	0.51	2.9	97.1	0.0	1.03	1.25	0.76	0.74	3.15	11746	766	4	0	2	0	5938	logfile
✔	8WQi	37746	2024-12-27	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.003	0.66	0.0	0.04	16.79	0.00	2.443	11.56	1.46	8.9	91.1	0.0	-0.36	0.53	0.65	0.80	0.91	5074	644	2	0	0	0	0	logfile

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