Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8WPK	37717	2024-12-31	2023-10-10	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16854	1909	11	70	1	0	0	logfile
✔	8UiP	42301	2024-12-27	2023-10-10	4.3	2.81	4.26	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	5.1	0.003	0.75	0.0	0.04	14.33	0.00	2.568	14.63	0.00	8.4	91.6	0.0	-2.17	2.12	0.41	0.54	—	2316	303	3	0	0	0	0	logfile
✔	8WPY	37726	2024-12-28	2023-10-10	3.02	2.32	3.01	2.1	0.003	0.50	0.0	0.04	10.49	0.00	2.208	3.63	0.65	2.7	97.3	0.0	0.14	0.76	0.79	3.69	2.0	0.004	0.62	0.0	0.04	13.30	0.00	2.423	5.75	2.17	3.5	96.5	0.0	-0.14	0.95	0.77	0.82	3.24	8408	1090	8	0	4	0	0	logfile
✔	8QSi	18633	2024-12-28	2023-10-10	2.75	3.33	2.76	3.1	0.010	1.47	28.0	0.10	14.45	0.01	1.925	0.42	0.39	4.3	95.7	0.0	-0.88	0.75	0.89	4.07	3.1	0.003	0.62	0.0	0.04	16.92	0.00	1.968	4.78	0.84	3.3	96.7	0.0	1.12	0.71	0.68	0.86	3.56	50784	6492	36	0	12	0	0	logfile
✔	8WPW	37725	2024-12-29	2023-10-10	2.49	2.20	2.52	1.8	0.003	0.50	0.0	0.04	9.27	0.01	2.131	4.50	1.63	3.2	96.6	0.2	0.00	0.80	0.82	4.52	1.8	0.004	0.63	0.0	0.04	13.48	0.01	2.499	4.65	3.18	4.0	95.9	0.2	0.06	0.94	0.83	0.85	3.78	9930	1294	8	0	3	0	0	logfile
✘	8QSN	18637	2024-12-27	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3579	464	1	0	0	0	0	logfile
✔	8UiN	42300	2024-12-28	2023-10-10	3.86	4.18	3.93	4.1	0.003	0.53	0.0	0.04	14.53	0.00	2.178	9.14	0.07	3.7	96.2	0.1	0.38	0.78	0.79	1.85	4.1	0.005	0.68	0.0	0.04	16.15	0.00	2.471	9.85	2.74	3.7	96.2	0.1	0.09	0.42	0.81	0.83	1.49	28249	3746	12	0	5	0	0	logfile
✔	8QSL	18635	2024-12-28	2023-10-10	2.81	3.65	2.98	3.5	0.004	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.94	0.0	0.05	15.87	0.00	2.487	11.27	2.44	7.1	92.9	0.0	0.96	1.19	0.58	0.77	1.29	8506	1046	4	0	16	0	0	logfile
✔	8QSM	18636	2024-12-27	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.88	0.0	0.04	15.71	0.00	2.477	14.37	4.83	3.5	96.5	0.0	1.84	1.45	0.56	0.78	1.11	3579	464	1	0	0	0	0	logfile
✔	8UiB	42291	2024-12-30	2023-10-10	3.21	3.49	3.22	3.5	0.006	0.92	4.0	0.06	15.06	0.01	2.018	10.10	0.84	7.1	92.9	0.0	-2.75	0.73	0.77	2.36	3.5	0.003	0.65	0.0	0.04	16.55	0.00	2.001	11.15	1.60	4.9	95.1	0.0	-0.62	0.30	0.73	0.79	1.75	11868	1533	4	0	2	0	0	logfile
✘	8WPE	37714	2024-12-31	2023-10-10	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16745	1898	11	69	1	0	0	logfile
✔	8UiD	42293	2024-12-31	2023-10-10	2.81	2.98	2.84	3.0	0.013	1.90	20.0	0.11	15.02	0.02	1.749	2.34	4.05	6.3	93.7	0.0	-1.38	0.74	0.81	5.05	3.0	0.003	0.64	0.0	0.05	16.96	0.00	2.471	8.35	2.12	4.8	95.2	0.0	-0.47	1.45	0.75	0.86	4.00	15638	1930	4	0	0	0	0	logfile
✔	8WPP	37722	2024-12-31	2023-10-10	3.1	3.23	3.06	3.2	0.005	0.84	0.0	0.05	17.00	0.01	2.245	5.50	0.06	3.0	97.0	0.0	-1.85	0.70	0.74	2.73	3.2	0.004	0.64	0.0	0.04	18.47	0.00	2.321	12.33	1.37	3.1	96.9	0.0	-0.08	0.51	0.72	0.82	2.98	16826	1909	9	69	0	0	0	logfile
✔	8WPG	37716	2024-12-30	2023-10-10	2.7	2.92	—	3.0	0.004	0.60	0.0	0.04	16.88	0.00	2.163	9.08	0.08	4.2	95.8	0.0	-0.13	0.64	0.80	3.33	3.0	0.003	0.59	0.0	0.04	16.94	0.00	2.366	6.29	3.34	4.5	95.5	0.0	0.11	0.29	0.64	0.81	3.38	12443	1608	10	0	21	0	0	logfile
✘	8WPF	37715	2024-12-31	2023-10-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16896	1908	11	73	1	0	0	logfile
✔	8UiC	42292	2024-12-29	2023-10-10	3.54	3.85	3.66	3.9	0.007	0.97	1.0	0.06	16.03	0.00	2.082	6.84	1.99	9.2	90.8	0.0	-1.75	0.71	0.80	1.94	3.9	0.004	0.67	0.0	0.04	17.34	0.00	2.126	8.28	3.34	8.2	91.8	0.0	-0.26	0.41	0.73	0.81	1.67	9971	1227	3	0	2	0	0	logfile
✔	8QSK	18634	2024-12-28	2023-10-10	3.3	3.77	3.34	3.6	0.003	0.63	0.0	0.04	12.96	0.01	2.235	7.41	1.59	6.9	92.9	0.2	1.79	0.77	0.75	0.74	3.6	0.003	0.63	0.0	0.04	14.59	0.00	2.569	7.82	2.68	7.0	93.0	0.0	1.99	0.86	0.79	0.79	1.38	8506	1046	4	0	16	0	0	logfile
✔	8QRU	18626	2024-12-27	2023-10-09	2.9	3.28	2.75	3.2	0.003	0.52	0.0	0.04	13.62	0.01	2.257	6.45	0.61	2.0	98.0	0.0	1.76	0.50	0.88	4.30	3.2	0.003	0.63	0.0	0.04	15.52	0.01	2.559	7.40	2.14	1.0	99.0	0.0	1.94	0.47	0.50	0.88	3.58	3093	416	2	0	0	0	0	logfile
✔	8QRR	18624	2024-12-27	2023-10-09	2.78	3.20	2.64	3.1	0.003	0.49	0.0	0.04	14.32	0.01	2.234	5.92	1.21	1.4	98.6	0.0	2.25	0.53	0.89	3.31	3.2	0.004	0.55	0.0	0.04	14.47	0.00	2.203	6.08	1.52	1.0	99.0	0.0	2.82	0.25	0.51	0.89	3.34	3129	421	2	0	3	0	0	logfile
✔	8QRP	18622	2024-12-27	2023-10-09	2.7	3.10	2.57	3.0	0.002	0.47	0.0	0.04	13.51	0.00	2.285	5.31	0.00	1.5	98.5	0.0	1.62	0.46	0.86	3.59	3.0	0.006	1.37	1.0	0.04	14.74	0.00	2.209	6.71	2.43	1.0	99.0	0.0	3.22	0.39	0.47	0.86	3.80	3123	420	2	0	3	0	0	logfile

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