Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QRQ	18623	2024-12-27	2023-10-09	2.74	3.15	2.38	3.1	0.003	0.50	0.0	0.04	13.40	0.00	2.246	5.20	0.91	1.5	98.5	0.0	2.09	0.42	0.82	3.62	3.1	0.002	0.50	0.0	0.04	14.29	0.00	2.285	6.46	1.83	1.2	98.8	0.0	3.09	0.93	0.44	0.83	4.03	3092	415	2	0	3	0	0	logfile
✔	8QRP	18622	2024-12-27	2023-10-09	2.7	3.10	2.57	3.0	0.002	0.47	0.0	0.04	13.51	0.00	2.285	5.31	0.00	1.5	98.5	0.0	1.62	0.46	0.86	3.59	3.0	0.006	1.37	1.0	0.04	14.74	0.00	2.209	6.71	2.43	1.0	99.0	0.0	3.22	0.39	0.47	0.86	3.80	3123	420	2	0	3	0	0	logfile
✔	8QRV	18627	2024-12-27	2023-10-09	2.9	3.28	2.88	3.3	0.004	0.57	0.0	0.04	14.31	0.00	2.373	6.73	0.61	1.2	98.8	0.0	2.08	0.55	0.83	2.96	3.3	0.003	0.52	0.0	0.04	15.37	0.00	2.498	4.85	2.44	0.7	99.3	0.0	2.96	0.47	0.60	0.86	2.70	3111	419	2	0	1	0	0	logfile
✔	8QRU	18626	2024-12-27	2023-10-09	2.9	3.28	2.75	3.2	0.003	0.52	0.0	0.04	13.62	0.01	2.257	6.45	0.61	2.0	98.0	0.0	1.76	0.50	0.88	4.30	3.2	0.003	0.63	0.0	0.04	15.52	0.01	2.559	7.40	2.14	1.0	99.0	0.0	1.94	0.47	0.50	0.88	3.58	3093	416	2	0	0	0	0	logfile
✔	8QRi	18619	2024-12-29	2023-10-09	3.5	4.34	—	3.6	0.004	0.67	0.0	0.04	15.16	0.00	1.971	7.80	0.20	6.8	93.1	0.1	-0.30	0.82	0.76	1.47	3.6	0.003	0.60	0.0	0.04	15.90	0.00	2.311	6.87	1.46	6.6	93.3	0.1	0.52	0.41	0.83	0.77	1.24	55049	3380	2	0	0	0	27845	logfile
✔	8QRR	18624	2024-12-27	2023-10-09	2.78	3.20	2.64	3.1	0.003	0.49	0.0	0.04	14.32	0.01	2.234	5.92	1.21	1.4	98.6	0.0	2.25	0.53	0.89	3.31	3.2	0.004	0.55	0.0	0.04	14.47	0.00	2.203	6.08	1.52	1.0	99.0	0.0	2.82	0.25	0.51	0.89	3.34	3129	421	2	0	3	0	0	logfile
✔	8QRW	18628	2024-12-27	2023-10-09	3.0	3.23	2.93	3.2	0.002	0.50	0.0	0.03	13.75	0.00	2.188	4.07	0.00	1.2	98.8	0.0	2.07	0.53	0.85	2.97	3.2	0.003	0.62	0.0	0.04	15.07	0.00	2.320	4.22	1.22	1.2	98.8	0.0	2.53	0.34	0.50	0.83	3.07	3111	419	2	0	1	0	0	logfile
✔	8WP0	37705	2024-12-29	2023-10-08	3.4	3.57	3.31	3.5	0.005	1.11	2.0	0.06	11.22	0.01	1.932	2.88	0.00	7.8	92.2	0.0	-6.50	0.67	0.82	3.23	3.5	0.003	0.70	0.0	0.04	14.61	0.00	2.045	5.02	1.43	6.8	93.2	0.0	-2.65	0.68	0.67	0.85	2.03	9372	1217	2	0	4	0	0	logfile
✔	8WP1	37707	2024-12-28	2023-10-08	3.15	3.42	3.18	3.4	0.004	0.59	1.0	0.04	16.53	0.00	2.208	14.72	0.37	5.3	94.7	0.0	0.33	0.67	0.87	2.24	3.4	0.003	0.47	0.0	0.04	17.13	0.00	2.359	15.20	3.73	6.1	93.9	0.0	0.91	0.24	0.65	0.87	2.36	7328	922	5	0	1	1	2	logfile
✔	8UHB	42268	2024-12-31	2023-10-08	3.35	4.22	3.36	3.8	0.004	0.62	0.0	0.04	14.11	0.00	2.015	9.46	0.00	5.9	94.1	0.0	-1.42	0.70	0.72	2.21	3.8	0.003	0.61	0.0	0.04	15.03	0.00	2.361	5.91	0.78	4.8	95.2	0.0	-0.01	0.78	0.72	0.80	1.88	16561	1075	6	0	1	0	8144	logfile
✘	8WoZ	37703	2024-12-27	2023-10-08	3.25	2.47	3.32	2.2	0.003	0.70	1.0	0.04	16.32	0.01	2.147	10.00	0.15	5.8	94.2	0.0	-0.58	0.75	0.72	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6244	768	3	0	1	0	0	logfile
✔	8WoX	37701	2024-12-27	2023-10-08	2.75	2.45	3.23	2.2	0.003	0.53	0.0	0.04	13.94	0.00	2.099	4.19	0.00	4.3	95.7	0.0	0.02	0.77	0.83	3.39	2.2	0.003	0.60	0.0	0.04	16.25	0.00	2.121	4.68	2.50	3.6	96.4	0.0	0.48	0.49	0.76	0.83	3.05	6348	782	4	0	2	0	0	logfile
✔	8Woi	37690	2024-12-28	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.003	0.67	0.0	0.04	13.85	0.00	2.444	3.96	1.42	7.5	92.5	0.0	-2.63	0.64	0.68	0.85	2.63	9324	1217	1	0	0	0	0	logfile
✔	8WoQ	37695	2024-12-29	2023-10-07	2.85	3.57	2.89	3.4	0.004	0.82	0.0	0.05	15.76	0.01	2.046	7.66	3.96	4.8	95.1	0.1	1.00	0.65	0.84	3.05	3.4	0.003	0.74	0.0	0.04	14.94	0.00	1.998	5.86	2.07	4.6	95.4	0.0	1.13	0.89	0.65	0.84	3.15	11218	1294	10	0	35	4	0	logfile
✔	8WoR	37696	2024-12-29	2023-10-07	2.66	3.15	2.79	3.1	0.004	0.64	0.0	0.04	15.74	0.01	1.928	22.33	5.08	3.5	96.4	0.2	1.60	0.56	0.78	2.67	3.1	0.004	0.69	0.0	0.04	15.16	0.00	1.930	5.72	3.70	4.6	95.4	0.0	1.17	0.31	0.64	0.84	2.90	11218	1294	10	0	35	4	0	logfile
✔	8WoT	37698	2024-12-29	2023-10-07	3.18	3.73	3.22	3.7	0.003	0.52	0.0	0.04	17.95	0.00	2.020	30.44	0.27	5.3	94.7	0.0	1.30	0.67	0.84	2.00	3.7	0.004	0.72	0.0	0.05	16.67	0.00	2.308	8.45	3.62	5.3	94.5	0.2	0.34	0.89	0.67	0.84	2.17	10672	1272	8	0	22	0	0	logfile
✔	8WoM	37692	2024-12-29	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.002	0.64	0.0	0.04	14.07	0.00	2.400	4.43	1.33	5.9	94.1	0.0	-2.74	0.72	0.66	0.82	1.78	9348	1217	2	0	1	0	0	logfile
✔	8QRH	18614	2024-12-30	2023-10-07	3.6	3.69	3.47	3.7	0.003	0.72	0.0	0.05	12.21	0.01	2.255	2.66	0.00	3.6	96.4	0.0	-0.83	0.58	0.81	2.89	3.7	0.003	0.74	0.0	0.04	15.10	0.00	2.208	7.78	2.00	4.2	95.8	0.0	-0.33	0.74	0.59	0.82	2.24	12951	1689	9	0	3	0	0	logfile
✔	8Woo	37694	2024-12-29	2023-10-07	3.9	4.05	3.88	4.0	0.005	1.14	7.0	0.08	13.30	0.01	2.237	6.21	0.00	7.3	92.7	0.0	-6.18	0.64	0.81	2.72	4.0	0.003	0.73	1.0	0.04	15.26	0.00	2.016	7.38	2.34	6.5	93.5	0.0	-2.54	0.82	0.65	0.81	1.39	9412	1217	2	0	5	0	0	logfile
✔	8WoG	37686	2024-12-28	2023-10-07	2.97	3.33	3.06	3.3	0.004	0.50	0.0	0.04	16.62	0.00	1.844	15.62	2.96	3.7	96.3	0.0	0.49	0.62	0.87	2.87	3.3	0.003	0.48	0.0	0.04	16.91	0.00	2.348	15.21	3.82	4.5	95.5	0.0	1.18	0.27	0.61	0.86	2.66	7384	929	5	0	1	1	2	logfile

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