Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WoT	37698	2024-12-29	2023-10-07	3.18	3.73	3.22	3.7	0.003	0.52	0.0	0.04	17.95	0.00	2.020	30.44	0.27	5.3	94.7	0.0	1.30	0.67	0.84	2.00	3.7	0.004	0.72	0.0	0.05	16.67	0.00	2.308	8.45	3.62	5.3	94.5	0.2	0.34	0.89	0.67	0.84	2.17	10672	1272	8	0	22	0	0	logfile
✔	8WoR	37696	2024-12-29	2023-10-07	2.66	3.15	2.79	3.1	0.004	0.64	0.0	0.04	15.74	0.01	1.928	22.33	5.08	3.5	96.4	0.2	1.60	0.56	0.78	2.67	3.1	0.004	0.69	0.0	0.04	15.16	0.00	1.930	5.72	3.70	4.6	95.4	0.0	1.17	0.31	0.64	0.84	2.90	11218	1294	10	0	35	4	0	logfile
✔	8WoG	37686	2024-12-28	2023-10-07	2.97	3.33	3.06	3.3	0.004	0.50	0.0	0.04	16.62	0.00	1.844	15.62	2.96	3.7	96.3	0.0	0.49	0.62	0.87	2.87	3.3	0.003	0.48	0.0	0.04	16.91	0.00	2.348	15.21	3.82	4.5	95.5	0.0	1.18	0.27	0.61	0.86	2.66	7384	929	5	0	1	1	2	logfile
✔	8UH3	42245	2024-12-28	2023-10-06	3.31	3.52	3.29	3.5	0.003	0.57	0.0	0.04	14.49	0.00	2.196	10.84	0.11	2.7	97.3	0.0	0.42	0.68	0.79	2.84	3.5	0.004	0.62	0.0	0.04	15.82	0.00	2.503	8.90	2.75	2.9	97.1	0.0	0.44	2.19	0.68	0.83	2.41	8759	1098	7	0	5	1	0	logfile
✔	8WNT	37672	2024-12-28	2023-10-06	3.42	3.69	3.43	3.7	0.004	0.67	0.0	0.04	16.76	0.00	2.232	8.37	0.77	5.6	94.2	0.2	0.29	0.60	0.76	1.32	3.7	0.003	0.66	0.0	0.04	16.69	0.00	2.533	7.90	3.07	5.7	94.3	0.0	1.33	1.15	0.59	0.77	0.89	7309	933	5	0	5	0	0	logfile
✔	8UH2	42244	2024-12-26	2023-10-06	3.59	3.91	3.68	3.9	0.006	0.62	2.0	0.05	14.36	0.00	2.117	9.03	0.12	4.4	95.5	0.1	0.16	0.67	0.73	2.19	3.9	0.003	0.58	0.0	0.04	15.71	0.00	2.403	6.45	2.26	3.3	96.6	0.1	0.31	0.95	0.74	0.77	1.60	24887	3307	10	0	4	0	0	logfile
✔	8UGY	42241	2024-12-27	2023-10-06	3.31	3.49	3.30	3.5	0.003	0.56	0.0	0.04	14.65	0.00	2.138	7.35	0.00	2.7	97.2	0.1	0.36	0.63	0.79	2.31	3.5	0.003	0.56	0.0	0.04	15.02	0.00	2.443	6.42	2.70	3.3	96.6	0.1	0.82	0.31	0.63	0.82	1.79	6970	864	5	0	6	1	0	logfile
✘	8WNS	37671	2024-12-28	2023-10-06	3.42	3.80	3.55	3.7	0.003	0.65	0.0	0.04	16.66	0.00	2.207	10.68	0.39	4.0	96.0	0.0	1.29	0.64	0.77	1.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7226	924	3	0	4	0	0	logfile
✔	8Wo7	37681	2024-12-28	2023-10-06	2.9	3.17	2.85	3.2	0.007	0.69	0.0	0.04	13.01	0.00	2.107	7.94	0.00	2.7	97.3	0.0	1.23	0.64	0.86	2.77	3.2	0.003	0.58	0.0	0.04	15.18	0.00	2.488	7.20	1.63	3.3	96.5	0.2	1.86	0.37	0.62	0.87	2.36	8118	1080	4	0	4	0	0	logfile
✔	8WNP	37670	2024-12-30	2023-10-06	3.1	3.37	3.16	3.4	0.024	1.04	0.0	0.04	14.69	0.01	1.951	6.73	0.38	7.1	92.8	0.1	-1.41	0.58	0.65	1.74	3.4	0.004	0.74	0.0	0.05	16.29	0.01	2.329	8.06	3.01	7.9	92.0	0.1	-1.48	0.82	0.60	0.69	1.60	14142	1822	10	0	2	0	0	logfile
✔	8QR0	18610	2024-12-29	2023-10-06	2.5	2.61	2.54	2.6	0.014	1.67	10.0	0.09	16.28	0.02	2.361	5.64	4.26	1.1	98.9	0.0	-1.18	0.72	0.92	5.12	2.6	0.003	0.61	0.0	0.04	15.45	0.00	2.543	6.41	1.85	0.8	99.2	0.0	3.68	0.33	0.70	0.89	3.63	11598	1360	15	0	41	145	0	logfile
✔	8QQU	18605	2024-12-29	2023-10-06	2.9	3.10	2.97	3.1	0.004	0.67	0.0	0.05	13.97	0.00	2.111	1.46	0.00	3.5	96.5	0.0	0.03	0.64	0.86	3.91	3.1	0.003	0.58	0.0	0.04	17.98	0.00	2.453	5.29	2.15	2.7	97.3	0.0	1.12	1.09	0.66	0.88	3.25	10715	1273	4	32	0	0	0	logfile
✔	8WNU	37673	2024-12-30	2023-10-06	3.8	4.07	3.82	4.1	0.003	0.58	0.0	0.04	15.01	0.00	1.960	9.85	0.13	8.0	91.8	0.2	-1.09	0.69	0.63	0.95	4.1	0.004	0.79	0.0	0.04	17.02	0.01	2.381	10.35	3.46	8.6	91.2	0.2	-1.61	0.83	0.71	0.71	0.83	14152	1824	10	0	2	0	0	logfile
✔	8WNW	37674	2024-12-27	2023-10-06	3.5	3.04	3.38	3.4	0.013	1.77	2.0	0.11	13.59	0.01	2.500	4.92	2.31	1.8	98.2	0.0	2.30	0.43	0.69	2.59	3.2	0.002	0.57	0.0	0.04	15.11	0.00	2.444	8.09	1.54	1.2	98.8	0.0	2.56	1.27	0.49	0.75	2.87	1400	173	2	0	3	1	0	logfile
✔	8WNY	37675	2024-12-28	2023-10-06	3.5	3.74	3.44	3.8	0.003	0.67	0.0	0.06	15.85	0.00	2.225	7.57	0.39	2.8	97.2	0.0	1.28	0.63	0.78	1.63	3.7	0.003	0.59	0.0	0.04	16.27	0.00	2.527	4.89	3.35	3.5	96.5	0.0	2.05	0.34	0.65	0.78	1.39	7233	924	4	0	5	0	0	logfile
✔	8UG4	42213	2024-12-28	2023-10-05	3.02	2.74	2.96	3.0	0.006	0.73	0.0	0.06	14.72	0.02	2.207	9.47	0.00	2.4	97.6	0.0	1.83	0.60	0.86	3.18	3.0	0.003	0.48	0.0	0.04	15.45	0.00	2.516	6.44	0.48	2.1	97.9	0.0	3.01	0.92	0.61	0.89	3.32	7802	972	2	0	0	0	0	logfile
✔	8QQN	18599	2024-12-28	2023-10-05	2.342	3.20	2.34	3.0	0.010	1.49	56.0	0.11	14.72	0.01	1.980	0.51	0.83	2.1	97.9	0.0	-0.08	0.67	0.90	4.17	3.0	0.003	0.69	0.0	0.04	17.97	0.00	1.985	5.13	2.31	2.4	97.6	0.0	1.46	2.14	0.61	0.87	2.99	50328	6432	36	0	12	0	0	logfile
✔	8UG5	42214	2024-12-27	2023-10-05	2.91	2.34	2.88	2.9	0.008	1.13	0.0	0.08	13.47	0.02	2.029	8.71	0.00	4.8	95.2	0.0	0.42	0.53	0.82	2.97	2.9	0.004	0.57	0.0	0.04	16.33	0.00	2.587	8.47	4.09	2.3	97.7	0.0	2.40	1.40	0.53	0.84	3.25	6160	764	2	0	0	0	0	logfile
✔	8UG6	42215	2024-12-27	2023-10-05	3.06	2.81	3.01	3.0	0.005	0.66	0.0	0.05	16.57	0.01	2.215	7.06	0.00	2.1	97.9	0.0	1.97	0.44	0.65	1.56	3.0	0.003	0.60	0.0	0.04	17.32	0.00	2.539	8.17	2.24	0.8	99.2	0.0	3.20	2.20	0.53	0.80	1.93	6242	786	2	0	0	0	0	logfile
✔	8UG7	42216	2024-12-27	2023-10-05	2.95	2.74	2.90	2.9	0.005	0.66	0.0	0.05	16.57	0.01	2.215	7.06	0.00	2.1	97.9	0.0	1.97	0.60	0.89	3.44	2.9	0.003	0.52	0.0	0.04	17.02	0.00	2.559	5.87	1.49	1.6	98.4	0.0	3.76	1.28	0.60	0.90	3.38	6242	786	2	0	0	0	0	logfile

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