Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UFE	42205	2024-12-27	2023-10-04	3.68	4.10	3.84	4.1	0.005	0.79	0.0	0.04	19.16	0.00	2.205	12.83	1.76	5.3	94.4	0.2	1.92	0.49	0.72	-0.41	4.1	0.003	0.66	0.0	0.04	18.34	0.00	2.458	12.83	5.88	5.3	94.4	0.2	1.75	0.38	0.53	0.74	0.06	3449	470	2	0	1	0	0	logfile
✔	8WMQ	37658	2024-12-31	2023-10-04	3.3	2.84	3.57	3.5	0.004	1.07	0.0	0.04	14.04	0.01	2.060	5.60	0.00	3.3	96.7	0.0	0.89	0.62	0.80	1.20	3.5	0.004	1.02	0.0	0.04	14.82	0.00	2.238	3.96	1.63	6.2	93.8	0.0	1.30	1.31	0.63	0.83	1.22	16348	1080	6	0	6	0	8208	logfile
✔	8QQi	18592	2024-12-31	2023-10-04	2.9	3.20	2.96	3.2	0.003	0.60	0.0	0.04	14.26	0.01	2.370	1.17	0.13	4.6	95.4	0.0	-2.86	0.78	0.85	3.64	3.2	0.003	0.55	0.0	0.04	17.71	0.00	2.173	2.59	2.01	3.9	96.1	0.0	-0.23	0.64	0.76	0.85	3.14	15652	1832	10	52	4	0	0	logfile
✔	8WMA	37647	2024-12-27	2023-10-03	3.47	2.40	3.36	2.3	0.007	0.80	0.0	0.05	11.97	0.00	1.739	5.91	0.31	4.4	95.6	0.0	-0.62	0.68	0.73	3.00	2.0	0.004	0.63	0.0	0.04	14.99	0.00	2.535	7.03	2.48	3.7	96.3	0.0	0.70	0.43	0.70	0.74	2.30	3172	413	2	0	0	0	0	logfile
✘	8WMF	37651	2024-12-26	2023-10-03	2.51	3.17	2.58	3.0	0.003	0.51	0.0	0.04	12.96	0.00	0.000	5.47	0.00	4.3	95.7	0.0	0.17	0.79	0.77	3.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43235	5370	25	0	90	0	0	logfile
✔	8QPZ	18570	2024-12-27	2023-10-03	2.5	2.74	2.49	2.9	0.004	0.70	0.0	0.05	10.84	0.00	2.495	9.26	8.57	0.0	100.0	0.0	-1.32	0.50	0.78	4.05	2.9	0.007	0.69	0.0	0.05	12.95	0.00	2.520	4.15	8.33	6.1	93.9	0.0	-2.53	0.43	0.53	0.81	4.63	4116	612	12	0	0	0	0	logfile
✔	8WMi	37653	2024-12-29	2023-10-03	3.53	4.01	3.72	3.9	0.003	0.66	0.0	0.04	16.40	0.00	2.226	3.76	0.00	5.3	94.7	0.0	-1.01	0.74	0.77	1.61	3.9	0.002	0.60	0.0	0.04	17.64	0.00	2.440	5.47	1.31	5.5	94.5	0.0	-0.86	0.45	0.75	0.79	2.04	10763	1237	3	39	4	0	0	logfile
✔	8WM8	37645	2024-12-31	2023-10-03	3.54	3.92	3.62	3.9	0.002	0.58	0.0	0.04	14.85	0.00	1.963	8.64	0.00	7.3	92.7	0.0	-2.51	0.59	0.76	1.77	3.9	0.003	0.63	0.0	0.04	16.22	0.00	2.358	7.63	1.23	7.2	92.8	0.0	-1.95	0.39	0.56	0.73	1.52	16776	1055	5	0	1	0	8522	logfile
✔	8WML	37655	2024-12-30	2023-10-03	2.86	3.12	3.00	3.1	0.005	0.86	0.0	0.06	16.12	0.01	2.070	2.65	0.00	4.4	95.6	0.0	-1.13	0.70	0.83	3.08	3.1	0.003	0.59	0.0	0.04	17.41	0.00	2.352	3.92	1.26	4.1	95.9	0.0	-0.38	0.49	0.72	0.85	2.69	13283	1543	4	38	4	0	0	logfile
✔	8QPV	18563	2024-12-30	2023-10-03	4.0	3.74	3.84	3.7	0.003	0.65	0.0	0.04	13.78	0.00	2.138	10.79	0.34	6.3	93.6	0.1	-0.37	0.70	0.82	—	3.7	0.004	0.82	0.0	0.04	15.95	0.00	1.721	8.87	3.02	6.7	93.3	0.1	-0.29	0.40	0.70	0.83	—	14088	1802	7	0	23	0	0	logfile
✔	8UF7	42185	2024-12-27	2023-10-03	3.2	2.40	3.23	2.0	0.005	0.70	0.0	0.05	18.21	0.01	2.204	18.82	0.89	12.8	86.6	0.6	-2.23	0.68	0.67	1.77	2.1	0.005	0.74	0.0	0.05	18.48	0.01	2.487	16.88	7.61	12.6	86.8	0.6	-2.27	0.30	0.68	0.67	1.43	3927	514	3	0	0	0	0	logfile
✔	8WM5	37641	2024-12-28	2023-10-03	3.04	3.42	3.11	3.4	0.007	0.77	0.0	0.04	18.60	0.01	1.284	12.25	0.00	4.3	95.6	0.1	1.57	0.66	0.85	2.35	3.4	0.004	0.58	0.0	0.04	16.86	0.00	2.376	9.34	2.54	2.2	97.8	0.0	2.45	0.92	0.58	0.86	2.17	7179	950	4	0	5	0	0	logfile
✔	8WMH	37652	2024-12-30	2023-10-03	2.6	2.23	2.67	1.8	0.003	0.54	0.0	0.04	19.42	0.00	2.196	9.02	0.36	4.1	95.9	0.0	-0.02	0.60	0.62	2.31	1.8	0.004	0.59	0.0	0.04	20.27	0.00	2.512	7.27	1.81	4.5	95.5	0.0	-0.18	0.66	0.73	0.74	2.32	12942	1198	4	141	0	0	0	logfile
✔	8WM4	37640	2024-12-29	2023-10-02	2.93	3.34	3.10	3.3	0.004	0.87	0.0	0.05	17.05	0.01	2.291	4.80	0.78	5.9	94.1	0.0	-2.05	0.71	0.73	1.32	3.3	0.003	0.67	0.0	0.04	17.88	0.00	2.379	8.21	2.60	6.5	93.5	0.0	-0.90	0.55	0.73	0.75	1.38	11530	1331	3	38	4	0	0	logfile
✔	8QPG	18550	2024-12-31	2023-10-02	2.36	3.26	1.85	3.0	0.008	1.50	15.0	0.11	14.87	0.01	1.825	1.74	0.31	2.5	97.5	0.0	-0.54	0.80	0.92	5.16	3.0	0.003	0.59	0.0	0.05	16.64	0.00	1.987	6.79	2.14	2.5	97.5	0.0	-0.18	1.27	0.74	0.89	4.33	14550	1920	18	0	24	0	0	logfile
✔	8QPE	18548	2024-12-29	2023-10-01	3.1	3.23	3.01	3.0	0.002	0.47	0.0	0.11	15.70	0.00	2.202	8.57	0.00	1.9	98.1	0.0	1.39	0.69	0.83	2.26	2.9	0.003	0.52	0.0	0.04	16.39	0.00	2.401	7.48	0.75	2.0	98.0	0.0	1.39	0.29	0.70	0.86	2.29	54566	6251	21	236	1	0	0	logfile
✔	8QPA	18546	2024-12-26	2023-10-01	3.7	3.12	3.70	3.4	0.003	0.60	0.0	0.12	16.94	0.00	2.198	13.38	0.05	3.2	96.8	0.0	-0.66	0.65	0.77	2.00	3.4	0.003	0.63	0.0	0.04	18.08	0.00	2.324	10.74	2.31	3.9	96.1	0.0	-0.27	0.37	0.65	0.77	1.59	43455	4880	18	206	1	0	0	logfile
✔	8QPB	18547	2024-12-26	2023-10-01	3.7	3.51	3.59	3.0	0.003	0.52	0.0	0.12	17.31	0.00	2.195	11.56	0.02	3.0	97.0	0.0	0.72	0.69	0.73	1.63	3.0	0.004	0.59	0.0	0.04	18.18	0.00	2.098	10.74	1.42	3.9	96.1	0.0	0.58	1.20	0.70	0.75	1.66	43804	4846	18	220	1	0	0	logfile
✔	8QPF	18549	2024-12-28	2023-10-01	2.53	3.55	2.56	3.3	0.005	0.84	0.0	0.05	14.75	0.01	2.257	3.31	0.75	2.3	97.5	0.3	-0.50	0.78	0.84	3.52	3.3	0.004	0.62	0.0	0.04	15.54	0.00	2.508	7.01	1.70	2.1	97.7	0.3	2.74	1.03	0.65	0.84	3.30	9085	1167	6	0	0	202	0	logfile
✔	8WLL	37623	2024-12-27	2023-09-30	3.74	3.82	3.77	3.9	0.024	1.06	0.0	0.10	13.07	0.01	2.238	10.14	0.00	2.9	97.1	0.0	0.58	0.50	0.76	1.39	3.8	0.004	0.91	0.0	0.05	15.79	0.00	2.553	13.35	4.68	2.9	97.1	0.0	0.73	0.51	0.49	0.77	0.17	2815	389	2	0	1	0	0	logfile

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