Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iMA	60686	2024-12-28	2024-07-02	2.65	3.02	2.78	3.0	0.003	0.70	0.0	0.04	12.29	0.01	2.292	4.08	0.00	4.3	95.7	0.0	0.12	0.57	0.86	3.50	3.0	0.003	0.59	0.0	0.04	14.61	0.00	2.540	3.95	2.19	4.6	95.2	0.1	1.16	0.39	0.58	0.88	3.79	7472	933	6	0	6	0	0	logfile
✔	9iM6	60685	2024-12-28	2024-07-02	3.21	3.45	3.24	3.4	0.003	0.62	0.0	0.04	18.98	0.01	2.142	7.20	0.20	6.4	93.2	0.4	1.15	0.65	0.84	1.89	3.4	0.005	0.66	0.0	0.04	18.95	0.00	2.570	6.59	1.72	6.4	93.4	0.3	1.41	0.30	0.65	0.84	2.10	8982	1134	2	0	0	0	0	logfile
✔	9CHX	45604	2024-12-27	2024-07-02	3.5	3.91	3.87	3.9	0.004	0.66	0.0	0.04	14.88	0.00	2.146	9.43	0.00	4.9	95.1	0.0	-0.53	0.65	0.68	2.27	3.9	0.002	0.64	0.0	0.04	16.48	0.00	2.492	6.76	2.23	3.3	96.7	0.0	-0.03	0.45	0.64	0.72	1.09	7129	889	5	0	2	0	0	logfile
✔	9CHV	45603	2024-12-27	2024-07-02	3.95	4.29	3.77	4.3	0.009	1.53	33.0	0.11	15.28	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.003	0.68	0.0	0.04	16.64	0.00	2.402	7.18	3.79	4.1	95.9	0.0	-0.42	1.42	0.70	0.74	0.97	6644	873	4	0	1	0	0	logfile
✔	9CHU	45602	2024-12-27	2024-07-02	3.49	3.92	3.50	3.9	0.006	0.86	3.0	0.06	14.03	0.00	2.165	7.85	0.41	6.6	93.4	0.0	-1.06	0.71	0.80	2.51	3.9	0.004	0.69	0.0	0.04	15.95	0.00	2.126	4.68	2.58	5.2	94.8	0.0	0.01	0.47	0.71	0.82	1.44	7009	887	5	0	2	0	0	logfile
✔	9CGZ	45589	2024-12-27	2024-07-01	2.69	2.42	2.56	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.63	0.0	0.05	17.08	0.00	2.562	5.13	1.30	7.5	92.5	0.0	-2.35	0.95	0.38	0.79	5.07	6822	438	6	0	0	0	3480	logfile
✔	9iLP	60672	2024-12-27	2024-07-01	3.4	3.10	3.17	3.2	0.005	0.81	6.0	0.05	13.89	0.01	2.197	8.33	0.49	7.1	91.8	1.2	-0.33	0.63	0.81	2.30	3.2	0.005	1.03	8.0	0.05	16.69	0.00	2.244	6.21	2.74	7.2	92.4	0.5	-0.05	2.41	0.63	0.84	2.28	51180	6444	24	0	0	0	0	logfile
✔	9CGX	45588	2024-12-27	2024-07-01	2.97	2.72	2.90	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.62	0.0	0.05	16.17	0.00	2.536	3.45	1.03	8.1	91.7	0.2	-2.75	1.36	0.36	0.77	5.04	6960	444	6	0	0	0	3540	logfile
✘	9CGi	45580	2024-12-31	2024-06-29	2.92	3.60	3.10	3.4	0.005	0.88	2.0	0.05	12.93	0.01	2.249	3.35	0.24	2.3	97.7	0.0	-0.05	0.85	0.88	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14751	1839	5	0	0	0	0	logfile
✘	9CEU	45519	2024-12-30	2024-06-27	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13398	607	5	108	1	0	6141	logfile
✔	9CES	45517	2024-12-31	2024-06-27	3.28	3.52	3.31	3.5	0.013	1.96	0.0	0.10	23.23	0.03	2.515	1.01	0.91	4.1	95.9	0.0	-0.87	0.56	0.46	2.49	3.4	0.003	0.62	0.0	0.03	23.35	0.00	2.185	6.00	2.18	4.1	95.9	0.0	0.99	1.27	0.71	0.74	2.42	15839	612	4	181	0	0	7001	logfile
✘	9CEV	45520	2024-12-30	2024-06-27	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14047	600	6	131	3	3	6353	logfile
✘	9CEW	45521	2024-12-31	2024-06-27	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15163	600	7	166	3	0	6758	logfile
✔	9iKC	60655	2024-12-30	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.006	0.74	0.0	0.05	15.95	0.01	2.523	2.99	1.00	2.8	97.2	0.0	-0.22	1.14	0.75	0.89	6.57	12555	1587	6	0	0	150	0	logfile
✘	9CEX	45522	2024-12-30	2024-06-27	3.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14679	600	8	151	3	3	6578	logfile
✘	9CEZ	45524	2024-12-30	2024-06-27	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13540	600	6	115	3	3	6178	logfile
✘	9CER	45516	2024-12-30	2024-06-27	4.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14598	612	2	142	0	0	6561	logfile
✘	9CEY	45523	2024-12-30	2024-06-27	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13829	607	6	121	3	3	6298	logfile
✘	9CET	45518	2024-12-30	2024-06-27	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14090	596	5	134	1	0	6375	logfile
✔	9FVD	50803	2024-12-29	2024-06-26	3.2	3.54	3.13	3.4	0.003	0.61	0.0	0.04	15.20	0.00	0.014	16.91	0.00	2.5	97.5	0.0	1.52	0.47	0.80	3.04	3.5	0.008	2.06	0.0	0.22	21.75	0.01	1.692	29.34	3.16	5.2	94.8	0.0	-0.15	2.32	0.43	0.70	1.34	10146	1143	8	54	0	0	0	logfile

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