Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8QHC	18407	2024-12-31	2023-09-07	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14829	1764	5	61	2	0	0	logfile
✔	8U3E	41859	2024-12-27	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.78	0.01	2.625	3.73	1.14	3.5	96.5	0.0	1.21	0.40	0.51	0.85	3.12	3338	427	1	0	0	0	0	logfile
✔	8WAM	37397	2024-12-28	2023-09-07	3.23	3.48	3.24	3.5	0.002	0.45	0.0	0.04	17.90	0.00	2.211	5.64	0.11	1.7	98.3	0.0	1.70	0.60	0.77	1.11	3.5	0.003	0.52	0.0	0.04	17.70	0.00	2.017	5.25	2.03	2.3	97.7	0.0	1.26	0.42	0.59	0.77	1.43	8650	1102	4	0	4	0	0	logfile
✔	8U3D	41858	2024-12-27	2023-09-07	2.83	3.27	2.77	3.2	0.009	0.78	0.0	0.05	12.53	0.01	2.284	5.37	0.00	5.0	95.0	0.0	-2.36	0.56	0.87	3.83	3.2	0.003	0.60	0.0	0.04	14.59	0.01	2.555	5.07	1.99	3.3	96.7	0.0	1.58	0.91	0.52	0.86	3.08	3338	427	1	0	0	0	0	logfile
✔	8U3F	41860	2024-12-27	2023-09-07	3.31	3.63	3.18	3.6	0.005	0.62	0.0	0.04	12.99	0.01	2.265	6.58	0.00	2.1	97.9	0.0	-1.54	0.57	0.87	2.88	3.6	0.004	0.59	0.0	0.04	14.61	0.00	2.565	6.72	2.49	2.6	97.4	0.0	1.86	0.35	0.56	0.87	2.35	3410	437	1	0	0	0	0	logfile
✔	8U39	41854	2024-12-29	2023-09-07	3.4	3.25	3.42	3.8	0.007	1.09	0.0	0.06	11.86	0.00	1.801	14.73	0.00	0.6	99.4	0.0	-0.14	0.46	0.50	0.29	3.7	0.003	0.57	0.0	0.04	14.88	0.00	2.337	5.29	0.81	2.7	97.3	0.0	1.04	1.36	0.58	0.76	0.94	56000	3668	7	0	0	0	28630	logfile
✔	8W9Y	37385	2024-12-30	2023-09-06	3.5	3.75	3.53	3.8	0.004	0.76	1.0	0.04	15.90	0.01	2.097	9.48	0.48	10.7	89.3	0.0	-0.43	0.58	0.75	1.32	3.7	0.003	0.64	0.0	0.04	16.82	0.00	2.482	5.74	4.01	10.3	89.7	0.0	0.31	0.58	0.59	0.78	1.28	13152	1584	6	0	0	0	0	logfile
✔	8W9Z	37386	2024-12-30	2023-09-06	3.0	3.89	3.12	3.3	0.005	0.72	2.0	0.06	9.63	0.00	1.688	5.63	1.71	3.4	96.6	0.0	-1.97	0.84	0.80	2.61	3.3	0.003	0.62	0.0	0.04	12.72	0.00	1.994	5.99	1.12	3.9	96.1	0.0	0.48	1.67	0.86	0.83	2.38	60525	8235	24	0	4	0	0	logfile
✘	8WA0	37387	2024-12-30	2023-09-06	2.7	3.55	2.95	3.1	0.015	1.73	88.0	0.15	13.64	0.01	1.455	4.86	5.39	2.7	97.3	0.0	0.57	0.82	0.84	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61128	8354	26	19	4	0	0	logfile
✔	8WA1	37388	2024-12-30	2023-09-06	2.8	3.82	2.97	2.9	0.005	0.72	8.0	0.05	11.75	0.00	1.793	6.08	5.25	2.2	97.8	0.0	-1.06	0.85	0.85	2.65	3.0	0.009	0.88	1.0	0.05	13.74	0.01	1.857	9.65	1.46	4.2	95.7	0.0	0.47	0.71	0.87	0.90	3.03	62699	8351	27	27	4	0	0	logfile
✔	8WA3	37390	2024-12-28	2023-09-06	2.86	3.76	2.88	3.5	0.003	0.65	0.0	0.04	14.06	0.00	2.090	9.53	1.03	5.1	94.9	0.0	0.71	0.65	0.80	1.97	3.5	0.003	0.73	0.0	0.05	16.59	0.00	2.405	8.55	1.71	5.1	94.9	0.0	0.62	1.62	0.63	0.79	2.00	8163	1031	5	0	0	0	0	logfile
✔	8W9N	37376	2024-12-27	2023-09-05	2.7	2.62	2.70	2.8	0.004	0.59	0.0	0.04	14.68	0.00	2.189	8.29	0.64	3.4	96.4	0.1	1.27	0.63	0.86	3.23	2.8	0.003	0.52	0.0	0.04	15.42	0.00	2.525	6.42	1.80	2.9	97.0	0.1	2.71	0.98	0.63	0.85	2.50	6860	854	4	0	2	0	0	logfile
✔	8W9o	37377	2024-12-27	2023-09-05	2.8	2.67	2.80	2.8	0.005	0.54	0.0	0.04	15.90	0.00	2.217	8.65	2.31	4.0	96.0	0.0	0.95	0.59	0.82	3.45	2.8	0.003	0.53	0.0	0.04	16.09	0.00	2.484	7.64	2.31	3.3	96.7	0.0	1.94	0.36	0.58	0.81	2.69	6862	854	4	0	4	0	0	logfile
✔	8QGT	18390	2024-12-29	2023-09-05	2.8	2.87	2.76	2.8	0.004	0.56	0.0	0.04	16.98	0.00	2.214	7.89	0.88	3.1	96.9	0.0	0.98	0.78	0.83	2.93	2.8	0.003	0.55	0.0	0.04	17.68	0.00	2.394	5.96	2.11	3.0	97.0	0.0	1.24	0.81	0.79	0.88	3.45	10635	1289	2	12	0	0	0	logfile
✔	8U2C	41845	2024-12-31	2023-09-05	2.5	2.75	2.49	2.9	0.012	1.88	5.0	0.10	13.83	0.02	2.543	0.27	1.85	4.1	95.6	0.3	-1.26	0.75	0.80	3.98	2.9	0.003	0.73	0.0	0.04	16.40	0.00	2.398	6.68	3.17	3.1	96.8	0.1	0.78	0.69	0.75	0.83	2.46	15042	1948	10	0	0	0	0	logfile
✘	8W9A	37362	2024-12-29	2023-09-05	2.7	2.81	2.62	2.8	0.008	0.80	0.0	0.05	10.21	0.01	2.156	13.98	0.18	5.4	94.6	0.0	-4.40	0.70	0.83	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10289	1245	3	0	1	2	0	logfile
✔	8W9V	37382	2024-12-27	2023-09-05	2.9	2.87	2.95	3.0	0.003	0.48	0.0	0.04	14.07	0.00	2.231	5.07	0.93	1.8	98.2	0.0	1.62	0.61	0.85	3.43	3.0	0.002	0.47	0.0	0.04	14.59	0.00	2.605	5.15	2.27	1.2	98.8	0.0	2.80	0.25	0.57	0.83	3.16	6574	852	4	0	6	0	0	logfile
✔	8W9C	37364	2024-12-31	2023-09-05	3.3	3.57	3.36	3.6	0.005	0.79	3.0	0.06	18.16	0.01	1.965	14.24	7.42	6.1	93.6	0.2	-3.11	0.65	0.69	1.91	3.6	0.003	0.68	0.0	0.04	18.26	0.00	1.983	9.82	2.75	5.6	94.4	0.0	0.26	0.70	0.64	0.71	1.78	15278	1868	9	0	9	0	0	logfile
✔	8W9B	37363	2024-12-29	2023-09-05	3.0	3.09	2.88	3.1	0.004	0.76	0.0	0.05	10.61	0.00	2.078	21.63	0.35	6.8	93.2	0.1	-5.57	0.66	0.76	3.50	3.1	0.004	0.72	0.0	0.05	16.78	0.00	2.407	7.34	2.46	6.6	93.3	0.1	-2.03	1.04	0.68	0.80	2.68	10245	1242	3	0	1	0	0	logfile
✔	8U2B	41844	2024-12-29	2023-09-05	0.86	3.74	2.85	3.4	0.011	1.83	0.0	0.08	9.63	0.01	2.506	0.50	0.00	2.4	97.6	0.0	0.09	0.80	0.85	5.79	3.4	0.003	0.58	0.0	0.03	13.70	0.00	2.598	10.04	2.79	2.0	98.0	0.0	4.66	1.04	0.83	0.93	3.07	11396	1665	37	0	0	0	0	logfile

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