Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U2C	41845	2024-12-31	2023-09-05	2.5	2.75	2.49	2.9	0.012	1.88	5.0	0.10	13.83	0.02	2.543	0.27	1.85	4.1	95.6	0.3	-1.26	0.75	0.80	3.98	2.9	0.003	0.73	0.0	0.04	16.40	0.00	2.398	6.68	3.17	3.1	96.8	0.1	0.78	0.69	0.75	0.83	2.46	15042	1948	10	0	0	0	0	logfile
✔	8QG0	18386	2024-12-27	2023-09-05	3.43	3.78	3.53	3.8	0.004	0.73	2.0	0.05	17.66	0.00	2.198	21.24	0.50	6.4	93.6	0.0	-1.84	0.65	0.68	1.62	3.8	0.005	0.73	0.0	0.05	19.42	0.00	2.491	17.36	2.99	5.2	94.8	0.0	-1.61	0.43	0.64	0.69	1.16	6080	656	4	34	0	0	0	logfile
✔	8U1X	41837	2024-12-29	2023-09-04	2.7	3.42	2.79	3.2	0.006	0.82	0.0	0.05	13.61	0.01	1.988	3.48	0.00	3.1	96.9	0.1	-5.72	0.78	0.85	3.50	3.2	0.003	0.63	0.0	0.04	15.25	0.00	2.040	4.88	1.06	2.5	97.5	0.0	0.74	1.15	0.76	0.84	2.63	11040	1375	4	0	2	0	0	logfile
✔	8W8Q	37356	2024-12-28	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	2.9	0.003	0.57	0.0	0.04	16.42	0.00	2.470	6.15	3.30	2.0	98.0	0.0	1.36	1.11	0.71	0.85	3.42	8168	1044	5	0	0	0	0	logfile
✘	8QFS	18383	2024-12-30	2023-09-04	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13294	1576	4	61	2	0	0	logfile
✔	8W8S	37358	2024-12-27	2023-09-04	3.3	4.07	2.88	3.9	0.007	0.89	0.0	0.05	16.08	0.01	2.310	8.96	1.64	4.0	96.0	0.0	1.56	0.57	0.81	1.74	3.9	0.004	0.61	0.0	0.04	16.47	0.00	2.486	3.93	0.82	3.2	96.8	0.0	2.56	0.29	0.58	0.82	1.31	2265	281	2	0	2	0	0	logfile
✔	8W8R	37357	2024-12-28	2023-09-04	3.3	3.13	3.14	3.2	0.006	0.85	0.0	0.06	16.67	0.00	2.227	7.59	1.64	5.2	94.8	0.0	-0.20	0.68	0.85	2.57	3.2	0.003	0.57	0.0	0.04	17.03	0.00	2.514	3.46	3.59	4.3	95.7	0.0	0.39	0.27	0.65	0.85	2.39	9018	1142	6	0	2	0	0	logfile
✔	8U1U	41829	2024-12-29	2023-09-02	3.1	3.41	—	3.3	0.004	0.71	0.0	0.05	13.15	0.01	2.003	6.13	0.00	3.5	96.5	0.0	0.26	0.72	0.82	3.41	3.3	0.004	0.67	0.0	0.04	15.20	0.00	2.379	7.55	1.43	3.5	96.5	0.0	0.20	0.46	0.72	0.85	2.64	9507	1206	6	0	1	0	0	logfile
✔	8W8E	37352	2024-12-28	2023-09-02	3.9	4.26	4.12	4.0	0.003	0.62	3.0	0.04	14.49	0.00	1.853	9.99	3.65	5.9	93.9	0.3	-1.13	0.77	0.64	1.29	4.0	0.006	0.79	0.0	0.05	16.39	0.00	2.376	13.72	2.02	5.8	94.2	0.0	-0.08	0.95	0.88	0.83	1.26	50912	6184	29	95	10	0	0	logfile
✔	8W8F	37353	2024-12-27	2023-09-02	4.0	4.51	7.49	4.1	0.002	0.54	0.0	0.04	14.71	0.00	1.923	8.55	3.62	4.8	95.1	0.1	-1.11	0.75	0.57	—	4.1	0.007	0.87	0.0	0.05	16.40	0.01	2.291	18.71	2.22	6.0	93.9	0.1	-0.34	0.94	0.89	0.82	—	46667	5587	26	95	10	0	0	logfile
✔	8U1N	41818	2024-12-28	2023-09-01	3.9	4.61	3.85	4.1	0.005	1.17	0.0	0.05	17.98	0.00	1.883	17.84	0.00	4.5	95.5	0.0	-1.18	0.91	0.78	1.29	4.1	0.003	0.65	0.0	0.04	18.35	0.00	1.800	13.35	2.79	3.8	96.2	0.0	-1.08	0.99	0.91	0.79	1.43	8164	994	4	0	4	0	0	logfile
✔	8U1L	41816	2024-12-30	2023-09-01	3.7	5.25	3.73	3.0	0.005	1.07	0.0	0.05	14.74	0.00	1.947	14.42	0.00	2.2	97.8	0.0	0.39	0.91	0.70	0.05	2.9	0.005	0.75	0.0	0.04	16.02	0.00	1.910	19.02	2.52	3.8	96.2	0.0	-0.07	0.57	0.93	0.81	0.19	12595	1543	6	0	4	0	0	logfile
✔	8U1M	41817	2024-12-28	2023-09-01	3.5	5.34	3.49	3.4	0.005	1.17	0.0	0.05	16.52	0.00	1.781	23.45	0.35	5.0	95.0	0.0	-1.18	0.92	0.72	0.71	3.0	0.003	0.67	0.0	0.04	17.20	0.00	1.911	15.42	2.20	4.1	95.9	0.0	-1.02	0.48	0.93	0.74	0.73	7882	957	4	0	4	0	0	logfile
✔	8W8A	37350	2024-12-28	2023-09-01	2.8	3.15	2.86	3.1	0.005	0.71	1.0	0.05	12.99	0.00	2.280	5.44	0.89	2.8	97.2	0.0	0.81	0.63	0.84	4.00	3.1	0.003	0.55	0.0	0.04	15.78	0.00	2.522	5.99	2.13	2.6	97.4	0.0	1.19	0.38	0.62	0.85	3.49	8260	1045	6	0	1	1	0	logfile
✔	8U1R	41825	2024-12-28	2023-09-01	3.6	3.81	3.64	3.8	0.005	0.77	0.0	0.05	15.16	0.00	2.182	5.32	1.05	3.3	96.7	0.0	-0.29	0.77	0.84	2.91	3.8	0.003	0.60	0.0	0.04	15.97	0.00	2.569	6.02	2.10	3.9	96.1	0.0	0.65	1.01	0.78	0.84	2.58	9126	1197	3	0	0	0	0	logfile
✔	8W87	37347	2024-12-28	2023-09-01	2.8	3.17	2.93	3.2	0.003	0.56	0.0	0.04	15.67	0.01	2.193	3.86	0.45	1.9	98.1	0.0	1.49	0.60	0.86	3.88	3.2	0.003	0.55	0.0	0.04	16.39	0.00	2.493	4.53	2.36	2.3	97.7	0.0	1.56	0.35	0.51	0.81	3.44	8228	1045	6	0	1	0	0	logfile
✔	8W89	37349	2024-12-28	2023-09-01	3.0	3.35	3.11	3.3	0.006	0.83	0.0	0.06	13.33	0.00	2.334	4.90	0.90	3.4	96.6	0.0	0.85	0.63	0.81	2.98	3.3	0.003	0.60	0.0	0.04	15.75	0.00	2.484	6.31	1.46	2.0	98.0	0.0	1.02	1.27	0.62	0.82	2.54	8230	1043	6	0	1	1	0	logfile
✔	8W8B	37351	2024-12-28	2023-09-01	3.0	3.35	3.12	3.3	0.005	0.58	0.0	0.04	14.50	0.00	2.063	4.34	0.54	2.3	97.7	0.0	1.35	0.67	0.86	3.99	3.3	0.003	0.55	0.0	0.04	15.13	0.00	2.457	4.40	1.40	2.6	97.4	0.0	1.40	0.32	0.63	0.86	3.21	8734	1096	6	0	7	0	0	logfile
✔	8W88	37348	2024-12-28	2023-09-01	2.6	2.99	2.75	2.9	0.006	0.64	0.0	0.04	14.72	0.01	2.143	4.00	0.34	2.7	97.3	0.0	1.00	0.71	0.87	4.27	3.0	0.003	0.55	0.0	0.04	15.70	0.00	2.413	4.50	2.80	2.2	97.8	0.0	1.41	0.49	0.60	0.85	3.37	8307	1039	6	0	4	0	0	logfile
✔	8U1o	41819	2024-12-31	2023-09-01	3.4	2.61	3.67	3.4	0.005	1.00	0.0	0.06	16.71	0.01	2.225	12.44	0.92	7.7	92.0	0.4	-2.51	0.56	0.72	1.67	3.4	0.004	0.81	0.0	0.05	17.09	0.00	2.404	17.76	3.92	7.9	91.9	0.3	-2.42	0.50	0.56	0.74	1.65	15096	1989	3	0	0	0	0	logfile

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