Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q9C	18276	2024-12-27	2023-08-20	3.4	3.58	3.33	3.5	0.011	1.96	1.0	0.09	9.22	0.01	2.524	0.00	0.00	5.9	94.1	0.0	-2.98	0.33	0.78	5.62	3.5	0.004	0.69	0.0	0.05	14.12	0.00	2.595	4.84	3.54	2.1	97.9	0.0	-1.98	2.73	0.34	0.84	5.13	3444	450	6	0	0	0	0	logfile
✔	8Q99	18272	2024-12-27	2023-08-20	2.7	2.49	2.59	2.7	0.011	1.82	0.0	0.10	11.76	0.01	2.486	0.00	0.00	2.7	97.3	0.0	-2.40	0.42	0.84	5.68	2.7	0.002	0.60	0.0	0.05	15.07	0.00	2.539	1.66	1.61	0.5	99.5	0.0	-1.57	1.57	0.40	0.88	6.04	6642	426	6	0	0	0	3396	logfile
✔	8Q9i	18282	2024-12-27	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	16.84	0.00	2.517	0.29	0.52	1.4	98.6	0.0	-1.69	1.47	0.37	0.86	7.83	3411	219	3	0	0	0	1740	logfile
✔	8TW4	41658	2024-12-27	2023-08-20	3.3	4.47	3.24	3.3	0.004	0.86	0.0	0.05	16.31	0.01	2.104	21.31	3.91	7.3	92.4	0.3	-2.23	0.65	0.57	0.29	3.3	0.003	0.83	0.0	0.05	16.72	0.00	2.368	16.70	5.16	7.8	92.0	0.1	-2.06	1.62	0.67	0.61	0.46	6401	828	15	0	12	0	0	logfile
✔	8TW9	41663	2024-12-30	2023-08-20	3.6	3.75	3.82	3.7	0.013	1.67	4.0	0.09	14.14	0.01	1.734	9.65	0.64	5.0	94.0	1.0	-1.53	0.84	0.74	2.21	3.7	0.003	0.64	0.0	0.04	15.32	0.00	2.521	8.03	1.99	3.2	96.6	0.1	0.79	0.59	0.87	0.82	2.07	13586	1656	7	24	1	0	0	logfile
✔	8KGW	37234	2024-12-27	2023-08-19	3.4	3.29	3.11	3.3	0.006	0.86	0.0	0.05	13.65	0.01	2.241	4.95	0.00	3.6	96.4	0.0	-0.70	0.51	0.69	2.70	3.3	0.003	0.66	0.0	0.04	15.42	0.00	2.487	6.43	2.58	4.2	95.8	0.0	0.36	0.45	0.55	0.72	2.46	4036	532	2	0	1	0	0	logfile
✔	8KGi	37222	2024-12-27	2023-08-19	3.2	3.65	3.28	3.6	0.003	0.67	0.0	0.04	13.82	0.00	2.303	10.16	0.00	2.1	97.9	0.0	2.76	0.52	0.73	2.71	3.6	0.004	0.74	0.0	0.05	15.76	0.00	2.478	12.33	1.88	3.3	96.7	0.0	2.94	0.43	0.52	0.75	2.31	5766	782	2	0	0	0	0	logfile
✔	8KGV	37233	2024-12-27	2023-08-19	3.2	3.67	3.27	3.6	0.005	0.80	0.0	0.05	13.39	0.01	2.297	10.33	0.23	1.5	98.3	0.2	0.35	0.52	0.76	2.25	3.6	0.003	0.67	0.0	0.04	15.29	0.00	2.560	10.45	2.53	2.7	97.3	0.0	1.68	1.03	0.51	0.76	1.75	4056	533	2	0	1	0	0	logfile
✔	8KGo	37228	2024-12-30	2023-08-19	3.4	3.44	3.32	3.4	0.011	1.14	0.0	0.07	11.21	0.01	2.219	3.95	0.92	7.2	92.8	0.0	-4.07	0.72	0.85	3.37	3.4	0.002	0.52	0.0	0.04	15.24	0.00	2.545	4.49	1.22	2.8	97.2	0.0	-0.14	0.83	0.72	0.85	1.52	12141	1494	2	0	0	0	0	logfile
✔	8KGL	37225	2024-12-28	2023-08-19	4.3	4.47	4.30	4.3	0.007	1.06	0.0	0.05	9.44	0.01	2.276	8.04	0.00	7.9	92.1	0.0	-3.21	0.81	0.76	—	4.3	0.002	0.60	0.0	0.04	11.12	0.00	2.474	8.97	0.00	5.1	94.9	0.0	0.24	0.91	0.81	0.75	—	8084	984	2	0	0	0	0	logfile
✔	8KGP	37229	2024-12-30	2023-08-19	3.3	3.40	3.26	3.4	0.011	1.05	0.0	0.07	11.20	0.01	2.314	5.05	0.76	5.9	94.1	0.0	-3.96	0.75	0.88	3.52	3.4	0.003	0.58	0.0	0.04	15.43	0.00	2.491	4.07	2.06	3.5	96.5	0.0	-0.26	1.59	0.75	0.89	2.61	12168	1498	2	0	0	0	0	logfile
✔	8KGR	37231	2024-12-30	2023-08-19	3.2	3.30	3.21	3.2	0.008	0.95	0.0	0.06	15.37	0.01	1.983	3.98	0.07	4.6	95.4	0.0	-3.81	0.77	0.86	4.33	3.2	0.003	0.55	0.0	0.04	17.60	0.00	2.003	4.97	2.05	2.9	97.1	0.0	0.30	0.86	0.78	0.87	2.54	13960	1558	6	65	2	0	0	logfile
✔	8Q8W	18263	2024-12-27	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.49	0.0	0.05	15.80	0.00	2.527	0.45	1.08	0.7	99.3	0.0	-0.68	1.98	0.39	0.89	6.48	6618	429	6	0	0	0	3372	logfile
✔	8Q8X	18264	2024-12-27	2023-08-19	2.54	2.40	2.39	2.5	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.5	97.5	0.0	-1.63	0.27	0.77	6.72	2.4	0.004	0.63	0.0	0.05	16.59	0.00	2.631	2.00	1.53	1.8	98.2	0.0	-1.99	0.92	0.37	0.91	6.87	3435	453	6	0	0	0	0	logfile
✔	8Q8Y	18265	2024-12-27	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.002	0.55	0.0	0.05	16.89	0.00	2.483	1.02	1.81	1.6	98.4	0.0	-1.49	1.19	0.35	0.88	5.36	6896	441	6	0	0	0	3521	logfile
✔	8KGK	37224	2024-12-28	2023-08-19	3.16	3.62	3.34	3.6	0.005	0.69	1.0	0.05	13.37	0.01	2.122	11.80	0.40	2.6	97.3	0.1	0.89	0.61	0.75	3.01	3.6	0.004	0.63	0.0	0.04	15.57	0.00	2.399	8.76	3.10	2.7	97.3	0.0	1.05	1.16	0.60	0.77	2.29	7476	1006	5	0	0	0	0	logfile
✔	8Q8Z	18266	2024-12-28	2023-08-19	3.16	3.15	3.34	3.2	0.011	1.88	0.0	0.08	10.80	0.01	2.522	0.00	0.00	4.6	95.4	0.0	-2.15	0.29	0.75	6.08	3.2	0.003	0.53	0.0	0.05	13.93	0.00	2.464	3.27	0.76	1.8	98.2	0.0	-1.87	2.95	0.33	0.85	5.48	7032	450	6	0	0	0	3588	logfile
✔	8Q92	18268	2024-12-27	2023-08-19	3.05	2.89	2.63	3.1	0.008	1.37	0.0	0.09	13.95	0.01	2.531	0.94	1.23	8.7	91.3	0.0	-3.17	0.37	0.86	4.77	3.1	0.004	0.73	0.0	0.05	15.65	0.00	2.616	4.21	2.06	5.8	94.2	0.0	-2.76	0.26	0.32	0.83	3.35	2091	282	3	0	0	0	0	logfile
✔	8Q96	18269	2024-12-27	2023-08-19	3.09	3.01	2.64	3.2	0.009	1.24	0.0	0.07	10.14	0.01	2.529	1.50	0.00	5.6	94.4	0.0	-3.54	0.47	0.86	5.83	3.1	0.009	0.85	0.0	0.05	14.67	0.00	2.579	3.49	3.50	6.5	93.5	0.0	-3.61	1.99	0.46	0.85	4.83	2100	224	12	0	88	0	0	logfile
✔	8Q8U	18261	2024-12-27	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.002	0.58	0.0	0.05	13.40	0.00	2.632	3.02	0.27	1.4	98.6	0.0	-2.29	1.34	0.45	0.77	2.76	6642	426	6	0	0	0	3396	logfile

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