Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TVV	41652	2024-12-29	2023-08-18	3.7	4.35	3.80	3.9	0.004	0.62	0.0	0.05	13.42	0.00	1.785	8.84	0.00	4.1	95.9	0.1	-0.09	0.86	0.76	1.61	3.9	0.003	0.54	0.0	0.04	14.56	0.00	1.896	5.33	0.56	4.6	95.4	0.1	0.62	1.24	0.87	0.78	1.20	58341	3747	21	56	9	0	28238	logfile
✔	8KGF	37219	2024-12-29	2023-08-18	2.9	3.60	2.93	3.3	0.011	1.47	0.0	0.08	13.54	0.01	1.960	8.69	0.44	5.0	95.0	0.0	-1.55	0.83	0.78	3.93	3.3	0.004	0.57	0.0	0.04	15.18	0.00	2.265	4.30	0.80	2.6	97.4	0.0	0.89	0.95	0.84	0.81	3.02	10872	1261	4	29	2	0	0	logfile
✔	8Q88	18249	2024-12-27	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.004	0.73	0.0	0.05	13.95	0.00	2.617	5.52	2.02	1.6	98.4	0.0	-2.34	1.32	0.40	0.87	4.83	3468	456	6	0	0	0	0	logfile
✔	8TVi	41643	2024-12-31	2023-08-18	3.2	3.45	3.22	3.5	0.012	1.27	0.0	0.06	10.01	0.01	1.868	1.14	0.00	2.4	97.6	0.0	0.52	0.76	0.87	4.57	3.5	0.003	0.55	0.0	0.04	12.94	0.00	2.086	2.01	0.65	1.7	98.3	0.0	0.75	0.43	0.72	0.89	4.62	15324	2052	8	0	8	0	0	logfile
✘	8TVX	41654	2024-12-30	2023-08-18	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59080	3748	21	56	9	0	28632	logfile
✘	8Q8S	18259	2024-12-29	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10611	684	9	0	0	0	5409	logfile
✘	8TVQ	41648	2024-12-29	2023-08-18	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57734	3424	20	100	443	0	26880	logfile
✔	8TVG	41641	2024-12-28	2023-08-18	3.3	3.38	3.21	3.5	0.013	1.36	0.0	0.08	8.92	0.01	2.402	1.16	0.75	2.7	96.8	0.5	0.61	0.75	0.80	3.91	3.4	0.004	0.63	0.0	0.05	13.23	0.00	2.534	2.45	1.24	4.7	95.3	0.0	0.93	1.18	0.77	0.86	3.38	8310	1131	6	0	6	0	0	logfile
✔	8Q8C	18250	2024-12-27	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.002	0.52	0.0	0.05	15.47	0.00	2.540	0.60	0.54	1.7	98.3	0.0	-0.98	1.22	0.39	0.89	7.72	6618	429	6	0	0	0	3372	logfile
✔	8TVE	41639	2024-12-28	2023-08-18	3.9	4.16	3.79	4.1	0.013	1.52	0.0	0.09	9.81	0.01	2.020	3.65	0.33	2.2	97.8	0.0	0.30	0.76	0.82	3.62	4.1	0.003	0.64	0.0	0.04	14.20	0.00	2.550	4.09	2.66	3.4	96.4	0.2	1.80	0.64	0.79	0.85	2.35	9090	1227	6	0	6	0	0	logfile
✔	8Q8V	18262	2024-12-28	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.003	0.65	0.0	0.05	14.41	0.00	2.496	9.82	0.51	5.5	94.5	0.0	-3.15	2.98	0.32	0.78	4.63	7032	450	6	0	0	0	3588	logfile
✔	8Q8L	18254	2024-12-27	2023-08-18	3.04	3.14	2.87	3.3	0.011	2.07	2.0	0.11	11.49	0.01	2.539	0.29	0.00	5.3	94.5	0.2	-2.17	0.33	0.74	5.41	3.2	0.005	0.80	0.0	0.05	14.85	0.00	2.510	4.03	2.56	3.9	96.1	0.0	-2.40	0.76	0.43	0.82	4.81	3405	447	6	0	0	0	0	logfile
✔	8TVH	41642	2024-12-27	2023-08-18	3.6	3.64	3.38	3.6	0.012	1.38	0.0	0.08	12.11	0.01	2.491	1.72	0.52	2.3	97.4	0.3	1.54	0.73	0.80	3.73	3.7	0.004	0.65	0.0	0.04	15.83	0.00	2.467	4.23	2.95	3.4	96.6	0.0	2.46	0.61	0.77	0.85	3.20	6744	939	12	0	3	0	0	logfile
✘	8TVW	41653	2024-12-30	2023-08-18	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61455	3748	21	56	9	0	30492	logfile
✔	8Q8E	18252	2024-12-27	2023-08-18	3.81	3.69	3.74	3.9	0.012	2.01	6.0	0.11	11.64	0.01	1.524	5.19	0.00	9.0	91.0	0.0	-2.95	0.28	0.52	2.07	4.0	0.006	0.95	0.0	0.06	15.07	0.01	2.382	11.24	4.74	10.5	89.5	0.0	-3.41	1.88	0.36	0.80	3.35	6810	894	12	0	0	0	0	logfile
✔	8Q8M	18255	2024-12-27	2023-08-18	2.95	3.13	2.89	3.1	0.011	1.96	7.0	0.12	11.82	0.01	2.510	0.00	0.00	7.4	92.6	0.0	-1.64	0.40	0.85	5.71	3.1	0.004	1.22	0.0	0.05	15.14	0.00	1.807	3.68	1.01	3.6	96.4	0.0	-1.68	1.08	0.41	0.87	5.80	7074	456	6	0	0	0	3606	logfile
✔	8Q8F	18253	2024-12-27	2023-08-18	2.93	2.97	2.77	3.0	0.011	1.82	0.0	0.08	12.08	0.01	2.504	0.00	0.76	5.4	94.6	0.0	-1.60	0.37	0.78	6.53	3.0	0.002	0.64	0.0	0.05	16.56	0.00	2.527	3.40	1.52	2.9	97.1	0.0	-1.75	3.51	0.42	0.89	4.01	3468	456	6	0	0	0	0	logfile
✘	8TVP	41647	2024-12-30	2023-08-18	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63938	3748	22	103	443	0	29847	logfile
✔	8Q8R	18258	2024-12-27	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.004	0.75	0.0	0.05	16.88	0.00	2.597	4.39	3.28	7.7	92.3	0.0	-1.65	1.06	0.44	0.88	5.86	3468	456	6	0	0	0	0	logfile
✔	8TVS	41650	2024-12-29	2023-08-18	4.4	4.59	4.48	4.1	0.004	0.77	0.0	0.05	15.19	0.00	1.713	10.23	0.00	4.5	95.5	0.1	-0.62	0.83	0.76	—	4.1	0.004	0.54	0.0	0.04	15.57	0.00	1.872	8.80	0.00	6.5	93.4	0.1	-0.28	0.49	0.84	0.78	—	56913	3697	22	104	443	0	24971	logfile

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