Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q8V	18262	2024-12-28	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.003	0.65	0.0	0.05	14.41	0.00	2.496	9.82	0.51	5.5	94.5	0.0	-3.15	2.98	0.32	0.78	4.63	7032	450	6	0	0	0	3588	logfile
✔	8Q8D	18251	2024-12-28	2023-08-18	3.04	2.88	2.87	3.0	0.011	1.85	2.0	0.08	13.26	0.01	2.504	0.00	0.00	2.9	97.1	0.0	-1.65	0.32	0.75	5.97	3.0	0.003	0.54	0.0	0.05	15.95	0.00	2.460	1.27	1.52	1.6	98.4	0.0	-1.25	1.52	0.40	0.87	5.74	7074	456	6	0	0	0	3606	logfile
✔	8Q7Y	18244	2024-12-29	2023-08-17	2.6	2.67	2.58	2.6	0.003	0.69	0.0	0.04	19.41	0.00	2.081	13.77	3.87	5.6	94.4	0.0	-1.10	0.64	0.77	3.25	2.6	0.006	0.82	0.0	0.05	18.91	0.01	2.531	10.91	7.36	8.2	91.8	0.0	-1.20	0.44	0.66	0.83	3.12	10032	1212	4	0	0	0	0	logfile
✔	8Q7T	18233	2024-12-29	2023-08-17	3.0	2.38	2.99	3.1	0.011	1.80	0.0	0.09	12.35	0.01	2.480	0.10	0.18	2.4	97.6	0.0	-1.65	0.27	0.65	4.83	3.0	0.006	0.66	0.0	0.05	16.39	0.00	2.373	5.06	3.17	3.3	96.7	0.0	-1.70	1.23	0.33	0.82	4.83	10083	654	9	0	0	0	5136	logfile
✔	8KG8	37213	2024-12-30	2023-08-17	4.23	6.03	4.25	4.2	0.002	0.58	0.0	0.04	14.46	0.00	1.997	13.72	0.01	4.1	95.9	0.0	0.19	0.84	0.78	—	4.2	0.003	0.58	0.0	0.04	14.38	0.00	1.922	12.51	0.00	5.0	95.0	0.0	0.36	1.19	0.85	0.81	—	63829	7950	25	25	17	0	0	logfile
✔	8Q85	18247	2024-12-29	2023-08-17	3.97	4.11	3.83	3.9	0.004	0.92	0.0	0.05	17.20	0.01	2.146	18.47	0.53	2.9	97.1	0.0	1.93	0.61	0.75	0.67	3.9	0.005	1.06	1.0	0.05	17.37	0.00	2.286	18.22	3.47	2.3	97.7	0.1	3.45	1.18	0.61	0.74	0.79	10299	1436	12	0	0	0	0	logfile
✔	8Q7V	18234	2024-12-28	2023-08-17	3.8	4.29	3.95	3.8	0.005	0.93	1.0	0.05	13.73	0.01	1.841	2.95	0.13	4.1	95.8	0.1	-2.94	0.76	0.66	0.71	3.8	0.005	0.69	0.0	0.04	15.31	0.00	1.649	6.50	0.96	7.1	92.9	0.0	-0.67	2.41	0.77	0.74	1.49	52613	3488	16	104	2	0	24559	logfile
✔	8Q7W	18235	2024-12-29	2023-08-17	3.9	4.12	4.10	3.9	0.004	0.89	1.0	0.05	13.28	0.01	1.841	3.29	0.08	3.6	96.3	0.1	-2.86	0.63	0.62	0.88	3.9	0.004	0.67	0.0	0.04	15.69	0.00	1.781	6.46	1.25	7.2	92.8	0.0	-0.66	1.84	0.66	0.70	1.51	57822	4064	16	104	2	0	26552	logfile
✔	8KG5	37210	2024-12-30	2023-08-17	3.17	3.45	3.27	3.5	0.010	1.15	0.0	0.06	14.60	0.01	2.212	12.39	0.49	5.5	94.5	0.0	-3.81	0.71	0.85	2.97	3.5	0.003	0.69	0.0	0.05	16.44	0.00	2.588	7.37	2.25	4.4	95.6	0.0	-0.66	2.26	0.69	0.86	2.03	12307	1577	8	0	3	0	0	logfile
✔	8KG9	37215	2024-12-30	2023-08-17	4.52	8.93	5.25	4.5	0.004	0.77	0.0	0.05	14.79	0.00	1.015	36.87	0.74	6.0	93.8	0.3	-0.28	0.88	0.79	—	4.5	0.003	0.70	0.0	0.04	14.97	0.00	1.864	24.41	0.00	5.9	94.0	0.1	-0.31	1.12	0.88	0.76	—	63507	7910	25	23	15	0	0	logfile
✔	8KFZ	37209	2024-12-28	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.003	0.66	0.0	0.04	16.23	0.00	2.483	11.64	4.25	2.5	97.5	0.0	0.79	0.33	0.72	0.72	1.37	8966	1139	5	0	0	0	0	logfile
✔	8Q7Q	18229	2024-12-28	2023-08-16	3.2	3.61	3.47	3.5	0.004	0.92	1.0	0.05	13.56	0.01	1.841	3.05	0.16	3.9	96.0	0.1	-2.94	0.69	0.76	2.52	3.5	0.005	0.65	0.0	0.04	15.54	0.00	2.057	4.10	1.23	6.3	93.6	0.1	-0.33	0.94	0.70	0.78	2.44	53697	3557	16	104	2	0	25117	logfile
✘	8TUG	41623	2024-12-31	2023-08-16	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65461	3748	22	103	512	0	31025	logfile
✔	8Q7F	18215	2024-12-27	2023-08-16	3.72	2.86	3.58	3.2	0.011	1.88	2.0	0.10	12.87	0.01	2.492	0.00	0.00	1.1	98.9	0.0	-1.74	0.32	0.74	3.87	3.2	0.004	0.72	0.0	0.05	16.00	0.00	2.486	7.65	1.79	0.7	99.3	0.0	-1.67	0.78	0.39	0.81	3.82	3402	450	6	0	0	0	0	logfile
✘	8Q7L	18219	2024-12-27	2023-08-16	2.82	2.80	2.86	2.9	0.011	1.90	4.0	0.11	11.68	0.01	2.159	2.03	0.00	4.4	95.6	0.0	-2.15	0.34	0.80	5.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3375	441	6	0	0	0	0	logfile
✔	8Q7P	18228	2024-12-27	2023-08-16	3.28	3.24	3.20	3.3	0.011	1.82	0.0	0.09	11.62	0.01	2.479	0.00	0.00	1.4	98.6	0.0	-1.91	0.36	0.78	5.16	3.2	0.005	0.66	0.0	0.05	16.27	0.00	2.508	4.04	3.33	1.1	98.9	0.0	-2.26	1.40	0.42	0.87	5.21	3402	450	6	0	0	0	0	logfile
✔	8KFY	37208	2024-12-28	2023-08-16	3.06	2.26	3.16	2.0	0.003	0.54	0.0	0.04	15.79	0.00	2.155	8.49	0.20	1.7	98.3	0.0	1.35	0.78	0.78	2.86	1.9	0.004	0.56	0.0	0.04	16.46	0.00	2.478	7.49	4.45	2.4	97.6	0.0	1.23	0.33	0.78	0.79	2.85	8992	1139	6	0	1	0	0	logfile
✔	8TUE	41622	2024-12-30	2023-08-16	2.1	2.26	2.18	2.3	0.003	0.50	0.0	0.03	18.50	0.00	1.765	6.27	0.69	2.7	97.3	0.0	4.33	0.62	0.83	6.49	2.3	0.005	0.62	0.0	0.04	18.56	0.00	1.531	6.56	0.58	2.9	97.1	0.0	3.73	0.28	0.67	0.87	6.65	66246	4128	48	0	30	0	32400	logfile
✔	8TUP	41628	2024-12-30	2023-08-16	3.3	3.44	3.30	3.4	0.002	0.41	0.0	0.04	14.81	0.00	2.277	4.52	0.00	2.2	97.8	0.0	2.02	0.65	0.78	2.89	3.4	0.006	0.63	0.0	0.04	15.33	0.00	2.608	5.93	3.27	1.7	98.3	0.0	1.99	0.35	0.58	0.81	2.81	12869	1590	12	0	3	66	0	logfile
✘	8KFX	37207	2024-12-28	2023-08-16	2.96	2.23	3.09	2.0	0.004	0.61	0.0	0.04	16.55	0.00	2.189	11.28	0.51	2.5	97.5	0.0	0.90	0.79	0.79	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9001	1139	6	0	1	0	0	logfile

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