Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TRH	41580	2024-12-30	2023-08-09	3.7	3.08	3.65	3.3	0.005	0.92	7.0	0.06	14.82	0.01	2.076	16.31	1.44	5.2	94.6	0.1	-0.06	0.68	0.62	0.93	3.2	0.002	0.64	0.0	0.04	16.86	0.00	2.432	7.14	1.64	4.5	95.5	0.0	0.72	0.73	0.71	0.67	0.94	59957	7603	28	0	22	0	0	logfile
✔	8TRM	41583	2024-12-28	2023-08-09	2.5	2.56	2.64	2.5	0.003	0.61	0.0	0.05	18.29	0.00	1.909	2.81	1.68	1.4	98.6	0.0	1.52	0.56	0.91	4.39	2.5	0.003	0.61	0.0	0.05	18.62	0.00	1.964	3.50	2.31	1.5	98.5	0.0	2.03	0.35	0.57	0.91	3.76	8814	1113	9	0	6	30	0	logfile
✔	8KCW	37112	2024-12-29	2023-08-08	2.77	3.13	2.73	3.1	0.005	0.82	0.0	0.05	18.78	0.01	2.126	5.92	0.18	2.8	97.2	0.0	-4.23	0.60	0.82	3.29	3.1	0.004	1.47	2.0	0.05	15.21	0.00	1.940	5.44	0.99	1.7	98.3	0.0	1.29	1.99	0.62	0.85	3.14	10484	1252	12	0	26	0	0	logfile
✔	8KCX	37113	2024-12-29	2023-08-08	2.96	3.37	2.90	3.3	0.005	0.77	0.0	0.06	20.46	0.00	2.273	4.87	0.39	1.8	98.2	0.0	-2.46	0.59	0.81	2.56	3.3	0.003	0.65	0.0	0.04	16.01	0.00	2.492	4.29	4.90	1.3	98.7	0.0	1.20	1.27	0.59	0.82	2.85	9486	1142	12	0	22	0	0	logfile
✔	8TQo	41510	2024-12-29	2023-08-08	3.1	3.83	3.25	3.7	0.002	0.54	0.0	0.04	16.86	0.00	2.202	8.77	0.16	4.5	95.5	0.0	0.14	0.76	0.83	1.75	3.7	0.003	0.58	0.0	0.04	17.04	0.00	2.496	7.38	3.74	4.4	95.6	0.0	0.55	1.02	0.71	0.80	2.59	11122	1437	4	0	0	0	0	logfile
✔	8KCC	37099	2024-12-31	2023-08-07	3.1	4.04	3.18	3.5	0.004	0.55	0.0	0.03	25.14	0.00	2.199	11.44	1.20	1.6	98.4	0.0	-0.05	0.86	0.80	1.22	3.5	0.003	0.59	0.0	0.03	26.04	0.00	2.312	10.54	1.20	2.7	97.3	0.0	2.38	0.75	0.89	0.85	1.51	16271	1270	12	300	2	0	0	logfile
✔	8KCB	37098	2024-12-30	2023-08-07	3.17	4.13	3.28	3.5	0.005	0.57	0.0	0.03	26.34	0.00	2.302	8.81	0.23	1.3	98.6	0.1	-1.26	0.83	0.77	0.89	3.5	0.004	0.65	0.0	0.03	27.44	0.00	2.143	10.29	2.42	2.1	97.9	0.0	2.48	1.07	0.85	0.86	0.99	14071	1184	12	252	2	0	0	logfile
✔	8KCi	37105	2024-12-29	2023-08-07	3.94	4.27	3.89	4.2	0.004	0.67	0.0	0.04	18.61	0.00	2.001	9.47	1.35	10.0	89.8	0.3	-0.20	0.63	0.70	0.56	4.2	0.003	0.68	0.0	0.04	18.57	0.00	1.992	7.81	3.00	9.6	90.4	0.0	-0.25	1.31	0.65	0.72	0.47	9515	1203	2	0	4	0	0	logfile
✔	8TQM	41508	2024-12-28	2023-08-07	3.2	3.40	3.14	3.4	0.007	0.92	0.0	0.04	13.43	0.00	1.724	12.07	0.00	2.5	97.5	0.0	2.28	0.62	0.78	2.62	3.4	0.003	0.50	0.0	0.04	15.14	0.00	2.331	6.94	0.79	2.6	97.4	0.0	2.46	0.62	0.58	0.80	2.13	7231	843	2	0	7	0	0	logfile
✔	8KC9	37097	2024-12-29	2023-08-06	3.75	4.32	3.88	4.2	0.004	0.79	0.0	0.05	18.98	0.00	2.168	10.18	1.18	4.3	95.3	0.3	0.48	0.62	0.64	1.30	4.2	0.003	0.66	0.0	0.04	18.08	0.00	2.110	6.63	2.66	4.7	95.1	0.3	0.87	1.71	0.69	0.74	1.32	9714	1196	6	0	6	0	0	logfile
✘	8TQ2	41499	2024-12-28	2023-08-06	3.8	3.50	3.80	3.8	0.002	0.55	0.0	0.04	14.16	0.00	2.278	6.09	0.00	2.0	98.0	0.0	0.72	0.67	0.79	2.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5505	672	4	0	0	0	0	logfile
✔	8KC7	37096	2024-12-31	2023-08-06	3.46	4.35	3.40	3.6	0.003	0.70	0.0	0.04	16.70	0.00	2.211	9.82	0.93	6.6	93.4	0.0	-1.18	0.84	0.79	1.58	3.7	0.006	0.74	0.0	0.04	17.17	0.00	2.525	12.87	2.55	8.9	91.1	0.0	-0.01	1.81	0.86	0.85	1.77	14326	1748	6	0	0	0	0	logfile
✔	8KC2	37090	2024-12-27	2023-08-05	2.6	2.24	2.62	2.0	0.005	0.75	0.0	0.05	14.84	0.01	1.829	5.70	0.87	6.9	93.0	0.1	-0.90	0.79	0.81	3.58	2.0	0.004	0.66	0.0	0.04	16.81	0.00	1.947	2.53	2.18	6.7	93.3	0.0	-0.30	0.48	0.84	0.85	3.68	6471	790	4	0	5	0	0	logfile
✔	8KBX	37086	2024-12-27	2023-08-04	3.23	3.45	3.22	3.4	0.005	1.10	0.0	0.06	13.38	0.01	1.571	9.65	0.00	9.3	90.2	0.4	-3.61	0.49	0.34	2.38	3.4	0.004	0.85	0.0	0.05	14.24	0.00	2.567	8.24	8.22	16.9	83.1	0.0	-4.40	1.83	0.58	0.58	2.75	6827	1190	2	0	0	0	0	logfile
✔	8TP3	41465	2024-12-30	2023-08-04	3.6	3.91	3.62	3.9	0.020	1.72	0.0	0.11	10.55	0.01	2.336	0.86	0.07	1.7	98.3	0.0	0.78	0.72	0.73	2.35	3.9	0.003	0.68	0.0	0.04	14.85	0.00	2.501	7.84	2.84	2.4	97.6	0.0	0.33	1.47	0.72	0.73	1.91	13691	1700	14	0	20	0	0	logfile
✔	8Q3P	18132	2024-12-30	2023-08-04	3.5	3.78	3.31	3.5	0.004	0.83	0.0	0.04	17.67	0.01	2.041	15.37	1.67	2.6	97.4	0.0	0.46	0.80	0.86	1.72	3.5	0.004	0.74	0.0	0.04	17.12	0.00	1.912	10.03	2.95	2.5	97.5	0.0	0.38	0.70	0.83	0.89	1.80	59922	7542	36	0	36	0	0	logfile
✔	8Q3Q	18133	2024-12-30	2023-08-04	3.3	3.73	3.28	3.5	0.004	0.81	0.0	0.04	17.25	0.00	2.089	14.72	3.07	1.9	98.1	0.0	1.28	0.78	0.87	1.62	3.5	0.005	0.73	0.0	0.04	17.09	0.00	1.943	9.72	3.52	2.0	98.0	0.0	1.28	1.05	0.80	0.91	1.86	59922	7542	36	0	36	0	0	logfile
✔	8TPN	41478	2024-12-28	2023-08-04	4.07	4.04	4.01	4.0	0.002	0.46	0.0	0.04	15.10	0.00	2.220	5.18	0.00	2.8	97.2	0.0	2.66	0.74	0.81	—	4.0	0.004	0.57	0.0	0.04	15.07	0.00	2.222	3.77	0.00	2.5	97.5	0.0	1.98	0.35	0.75	0.82	—	8612	1102	4	0	4	0	0	logfile
✔	8TPP	41480	2024-12-28	2023-08-04	3.64	3.68	3.65	3.8	0.003	0.53	0.0	0.04	16.55	0.00	2.227	6.28	0.11	2.5	97.5	0.0	2.18	0.76	0.81	1.00	3.8	0.002	0.54	0.0	0.04	17.18	0.00	2.340	4.39	3.46	2.8	97.2	0.0	2.49	0.29	0.77	0.81	1.05	9116	1168	4	0	4	0	0	logfile
✔	8TP4	41466	2024-12-30	2023-08-04	3.3	3.25	3.26	3.4	0.020	1.77	7.0	0.10	10.27	0.02	2.221	2.95	0.00	2.6	97.4	0.0	0.69	0.79	0.84	3.98	3.3	0.006	0.70	0.0	0.05	14.61	0.00	2.458	5.04	2.19	3.6	96.3	0.1	0.11	0.72	0.80	0.87	2.96	13472	1678	11	0	18	0	0	logfile

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