Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q3i	18128	2024-12-30	2023-08-04	3.11	3.47	3.15	3.1	0.002	0.55	0.0	0.04	14.02	0.01	2.051	3.32	0.00	1.9	98.1	0.0	0.84	0.87	0.81	3.30	3.1	0.003	0.51	0.0	0.04	15.08	0.00	1.902	2.45	0.28	2.0	98.0	0.0	1.43	1.04	0.90	0.88	2.61	60317	3872	9	0	3	0	30177	logfile
✔	8Q3P	18132	2024-12-30	2023-08-04	3.5	3.78	3.31	3.5	0.004	0.83	0.0	0.04	17.67	0.01	2.041	15.37	1.67	2.6	97.4	0.0	0.46	0.80	0.86	1.72	3.5	0.004	0.74	0.0	0.04	17.12	0.00	1.912	10.03	2.95	2.5	97.5	0.0	0.38	0.70	0.83	0.89	1.80	59922	7542	36	0	36	0	0	logfile
✔	8TP2	41464	2024-12-30	2023-08-04	3.1	3.01	3.03	3.2	0.021	1.69	0.0	0.10	10.56	0.01	2.009	1.70	0.00	2.2	97.8	0.0	0.79	0.77	0.85	4.18	3.1	0.003	0.61	0.0	0.04	14.50	0.00	2.450	5.26	1.43	2.6	97.4	0.0	0.49	1.36	0.77	0.86	3.13	13485	1678	11	0	19	0	0	logfile
✔	8Q3F	18126	2024-12-27	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.002	0.56	0.0	0.04	15.76	0.00	2.640	3.89	0.99	1.6	98.4	0.0	1.54	0.93	0.90	0.81	0.79	4599	578	1	0	0	0	0	logfile
✔	8ToK	41454	2024-12-29	2023-08-03	3.84	3.53	3.75	3.8	0.004	0.60	0.0	0.04	17.56	0.01	2.195	4.14	0.00	4.2	95.8	0.0	1.87	0.75	0.81	1.14	3.8	0.003	0.57	0.0	0.04	17.81	0.00	2.240	3.88	2.76	4.9	95.1	0.0	2.05	0.30	0.74	0.82	1.41	9908	1258	4	0	4	0	0	logfile
✔	8KAE	37008	2024-12-28	2023-08-03	3.18	3.46	3.28	3.5	0.013	1.06	0.0	0.06	13.54	0.01	2.147	7.23	0.00	7.2	92.8	0.0	-1.16	0.61	0.81	3.21	3.5	0.003	0.59	0.0	0.04	14.42	0.00	2.523	5.02	1.87	4.3	95.7	0.0	0.88	0.37	0.62	0.82	2.01	8440	1105	6	0	1	0	0	logfile
✔	8Toi	41453	2024-12-29	2023-08-03	2.64	2.63	2.63	3.0	0.010	1.86	0.0	0.05	24.38	0.01	2.318	2.95	0.00	3.6	96.4	0.0	-1.60	0.80	0.84	2.77	3.0	0.003	1.09	0.0	0.04	19.87	0.00	2.274	5.94	1.03	3.8	96.2	0.0	1.92	0.49	0.80	0.88	3.02	11414	1298	4	0	40	0	0	logfile
✔	8KB4	37069	2024-12-27	2023-08-03	3.1	3.80	3.15	3.6	0.004	0.70	0.0	0.04	19.10	0.00	2.151	19.36	0.00	6.1	93.9	0.0	1.68	0.65	0.85	2.49	3.6	0.002	0.57	0.0	0.04	16.19	0.00	2.545	3.84	0.84	4.5	95.5	0.0	2.14	1.25	0.64	0.84	2.08	3367	402	2	0	4	0	0	logfile
✔	8ToH	41452	2024-12-27	2023-08-03	3.29	2.67	3.33	2.3	0.003	0.58	0.0	0.04	14.46	0.00	2.227	13.99	0.00	7.3	92.7	0.0	-1.67	0.68	0.65	1.41	2.3	0.003	0.64	0.0	0.04	16.72	0.00	2.515	13.70	2.73	7.4	92.6	0.0	-1.06	0.47	0.69	0.66	1.13	7022	860	1	0	0	0	0	logfile
✔	8KB5	37070	2024-12-29	2023-08-03	2.26133	2.35	2.23	2.3	0.007	0.98	0.0	0.05	28.08	0.01	2.377	0.00	0.00	0.7	99.3	0.0	2.15	0.79	0.85	3.73	2.3	0.005	0.61	0.0	0.04	28.30	0.00	2.530	3.62	2.07	0.8	99.2	0.0	2.76	0.23	0.78	0.85	3.64	11953	758	10	290	0	0	0	logfile
✔	8TNW	41427	2024-12-28	2023-08-02	3.17	3.12	2.81	3.2	0.005	0.80	0.0	0.06	16.69	0.01	2.170	8.67	3.90	4.4	95.6	0.0	0.74	0.58	0.85	2.05	3.2	0.005	0.65	0.0	0.04	16.44	0.00	2.534	6.69	3.67	4.7	95.3	0.0	1.12	0.30	0.57	0.87	2.05	8874	1210	4	0	2	0	0	logfile
✔	8Q2J	18109	2024-12-27	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.005	0.65	0.0	0.05	17.45	0.00	2.433	4.07	0.50	0.2	99.8	0.0	-2.03	1.55	0.43	0.90	7.38	3507	462	6	0	0	0	0	logfile
✘	8KA8	37006	2024-12-27	2023-08-02	2.96	2.36	3.03	2.2	0.003	0.64	0.0	0.04	13.59	0.00	2.017	5.93	0.15	6.2	93.8	0.0	-0.68	0.79	0.79	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6481	790	5	0	7	0	0	logfile
✔	8Q2K	18111	2024-12-28	2023-08-02	2.88	2.65	2.79	2.8	0.011	1.80	0.0	0.07	10.49	0.01	2.538	0.43	0.00	4.1	95.9	0.0	-1.81	0.28	0.75	5.37	2.8	0.002	0.50	0.0	0.05	17.14	0.00	2.574	0.28	1.26	0.2	99.8	0.0	-1.54	3.23	0.37	0.85	4.70	7032	450	6	0	0	0	3588	logfile
✔	8Q2L	18112	2024-12-27	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.007	0.73	0.0	0.05	19.42	0.00	2.594	3.27	2.38	1.9	98.1	0.0	-1.88	1.25	0.41	0.93	7.30	3300	432	6	0	0	0	0	logfile
✔	8TNX	41428	2024-12-28	2023-08-02	3.03	3.42	3.12	3.4	0.007	0.90	0.0	0.06	16.34	0.02	2.278	7.41	4.12	2.8	96.8	0.4	0.06	0.59	0.80	2.75	3.4	0.003	0.58	0.0	0.04	14.96	0.00	2.584	4.20	3.38	2.0	98.0	0.0	1.75	0.94	0.55	0.81	3.00	8272	1152	4	0	2	0	0	logfile
✔	8TNY	41429	2024-12-28	2023-08-02	3.55	3.95	3.71	3.9	0.006	0.86	0.0	0.05	17.95	0.00	2.118	12.14	5.02	5.3	94.6	0.2	0.96	0.61	0.81	1.85	3.9	0.004	0.64	0.0	0.04	17.33	0.00	2.563	7.26	6.13	4.0	96.0	0.0	1.74	1.06	0.63	0.83	1.83	8026	1090	4	0	2	0	0	logfile
✘	8K9L	36990	2024-12-28	2023-08-01	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8919	1142	9	0	3	0	0	logfile
✔	8K9i	36987	2024-12-28	2023-08-01	4.2	2.69	4.05	3.8	0.018	1.41	0.0	0.10	15.71	0.01	2.377	21.05	5.67	6.7	93.3	0.0	-1.38	0.61	0.54	—	3.8	0.003	0.69	0.0	0.04	14.64	0.00	2.481	13.79	0.00	2.9	97.1	0.0	0.86	1.29	0.65	0.59	—	7657	939	4	0	0	0	0	logfile
✘	8K9K	36989	2024-12-28	2023-08-01	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8923	1142	8	0	2	0	0	logfile

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