Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K9G	36986	2024-12-31	2023-08-01	3.49	4.85	3.52	3.8	0.005	0.85	0.0	0.06	21.18	0.01	2.201	10.24	0.25	6.5	93.5	0.0	-1.99	0.77	0.60	0.80	3.8	0.003	0.66	0.0	0.04	20.97	0.00	2.384	12.69	2.04	4.7	95.3	0.0	-0.65	0.64	0.92	0.81	0.82	16759	1811	8	90	0	0	0	logfile
✔	8K9i	36987	2024-12-28	2023-08-01	4.2	2.69	4.05	3.8	0.018	1.41	0.0	0.10	15.71	0.01	2.377	21.05	5.67	6.7	93.3	0.0	-1.38	0.61	0.54	—	3.8	0.003	0.69	0.0	0.04	14.64	0.00	2.481	13.79	0.00	2.9	97.1	0.0	0.86	1.29	0.65	0.59	—	7657	939	4	0	0	0	0	logfile
✘	8K9L	36990	2024-12-28	2023-08-01	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8919	1142	9	0	3	0	0	logfile
✔	8K8T	36961	2024-12-29	2023-07-31	3.8	2.70	—	3.7	0.014	0.97	0.0	0.05	18.59	0.01	2.197	15.42	2.79	4.4	95.6	0.0	0.47	0.69	0.72	1.42	2.2	0.005	0.80	0.0	0.05	19.38	0.00	2.450	14.41	5.58	5.3	94.7	0.0	0.76	0.56	0.71	0.73	1.26	9926	1210	4	0	0	0	0	logfile
✔	8K98	36980	2024-12-30	2023-07-31	2.9	3.17	3.02	3.2	0.003	0.58	0.0	0.04	19.22	0.00	2.179	9.35	3.15	6.0	93.8	0.2	-0.15	0.63	0.75	1.48	3.2	0.005	0.67	0.0	0.05	19.43	0.00	2.397	9.27	3.83	7.2	92.7	0.1	-0.50	0.91	0.64	0.76	1.54	13415	1619	4	0	0	0	0	logfile
✔	8K8U	36962	2024-12-30	2023-07-31	3.05	3.23	3.08	3.2	0.009	0.68	0.0	0.05	12.04	0.00	1.873	1.34	0.00	2.5	97.3	0.2	0.06	0.65	0.72	2.56	3.2	0.004	0.63	0.0	0.04	15.83	0.00	1.898	7.53	1.78	3.7	96.2	0.1	-0.02	1.41	0.72	0.79	2.53	13969	1640	6	27	4	2	0	logfile
✔	8K8J	36951	2024-12-28	2023-07-30	2.88	3.12	—	3.1	0.004	0.58	0.0	0.04	15.12	0.00	2.190	9.34	0.11	5.3	94.7	0.0	0.30	0.66	0.84	3.80	3.1	0.002	0.55	0.0	0.04	16.88	0.00	2.518	7.25	2.03	4.4	95.6	0.0	0.81	0.38	0.65	0.84	3.16	8155	1031	6	0	1	0	0	logfile
✔	8K8E	36948	2024-12-29	2023-07-29	2.6	3.29	2.56	3.0	0.005	0.68	0.0	0.05	16.42	0.00	2.218	8.92	1.33	5.7	94.3	0.0	0.45	0.69	0.87	2.88	3.0	0.005	0.67	0.0	0.04	15.28	0.00	2.476	5.86	2.13	5.2	94.8	0.0	1.01	0.42	0.70	0.88	3.05	10716	1324	11	0	17	0	0	logfile
✔	8K87	36946	2024-12-30	2023-07-29	2.9	3.06	2.96	3.0	0.004	0.77	0.0	0.04	20.69	0.01	1.929	14.82	2.09	3.6	96.4	0.0	0.41	0.84	0.81	1.67	3.1	0.003	0.71	0.0	0.04	20.41	0.00	1.966	9.87	3.05	3.3	96.7	0.0	0.60	0.42	0.84	0.80	1.86	13372	1452	10	88	2	0	0	logfile
✔	8TMA	41382	2024-12-27	2023-07-29	3.2	3.37	3.02	3.3	0.004	0.68	0.0	0.05	12.06	0.01	2.324	3.32	0.00	4.0	95.8	0.2	-1.56	0.79	0.82	3.66	3.3	0.003	0.67	0.0	0.04	15.02	0.00	2.531	4.42	3.67	5.0	95.0	0.0	-0.44	1.72	0.80	0.84	3.87	3254	410	3	0	0	0	0	logfile
✔	8K88	36947	2024-12-27	2023-07-29	2.6	2.26	2.70	2.1	0.002	0.58	0.0	0.04	20.29	0.00	1.973	7.12	0.96	2.4	97.6	0.0	1.49	0.83	0.85	3.70	2.1	0.003	0.56	0.0	0.04	20.10	0.00	1.988	6.42	1.77	2.6	97.4	0.0	1.46	0.35	0.83	0.85	3.34	6686	726	5	44	1	0	0	logfile
✔	8Q0G	18053	2024-12-31	2023-07-28	4.3	3.53	4.58	3.4	0.005	0.71	0.0	0.05	13.48	0.00	2.149	15.70	0.13	8.5	91.4	0.0	-1.32	0.69	0.76	—	3.4	0.003	0.68	0.0	0.04	13.61	0.00	2.292	10.12	0.00	6.3	93.7	0.0	-0.85	0.45	0.68	0.75	—	15819	2168	7	0	0	0	0	logfile
✔	8Q0N	18056	2024-12-31	2023-07-28	4.2	4.02	3.99	4.1	0.002	0.48	0.0	0.04	13.78	0.00	2.181	5.46	0.00	1.7	98.3	0.0	1.28	0.56	0.43	—	3.9	0.004	0.63	0.0	0.04	14.46	0.00	2.326	7.53	0.00	5.0	95.0	0.0	0.56	1.05	0.68	0.65	—	15917	1009	4	0	2	0	7910	logfile
✔	8TM6	41380	2024-12-29	2023-07-28	2.8	3.31	2.86	3.2	0.002	0.49	0.0	0.04	14.72	0.00	2.043	4.20	0.10	2.3	97.7	0.1	1.33	0.81	0.85	2.95	3.2	0.003	0.62	0.0	0.04	16.01	0.00	2.271	7.08	1.59	2.9	97.0	0.1	1.27	1.14	0.79	0.87	2.98	58074	7640	34	0	0	0	0	logfile
✔	8PZU	18045	2024-12-30	2023-07-27	3.5	3.33	3.48	3.3	0.005	0.64	0.0	0.05	13.74	0.00	2.007	13.31	0.00	4.5	95.3	0.1	-0.37	0.77	0.79	2.64	3.3	0.003	0.61	0.0	0.04	15.64	0.00	1.995	12.50	1.69	5.2	94.8	0.1	-0.58	1.00	0.78	0.80	1.98	13782	1766	8	0	1	0	0	logfile
✔	8K7S	36940	2024-12-27	2023-07-27	3.51	3.68	3.44	3.7	0.002	0.53	0.0	0.04	8.56	0.00	2.263	8.04	0.95	7.4	92.2	0.4	0.24	0.65	0.67	0.85	3.7	0.004	0.74	0.0	0.05	14.59	0.01	2.501	9.26	4.60	8.3	91.1	0.6	-0.58	0.84	0.70	0.74	1.19	6645	800	9	0	18	0	0	logfile
✔	8TLM	41370	2024-12-27	2023-07-27	2.9	3.41	2.91	3.3	0.003	0.49	0.0	0.04	11.71	0.00	2.057	4.62	0.00	2.8	97.2	0.0	1.36	0.71	0.81	3.76	3.3	0.003	0.59	0.0	0.04	15.19	0.00	2.463	4.81	2.63	2.8	97.2	0.0	1.19	0.45	0.71	0.83	3.14	5400	696	3	0	0	0	0	logfile
✔	8TM1	41374	2024-12-27	2023-07-27	2.79	2.95	2.77	3.0	0.003	0.67	0.0	0.05	12.21	0.01	2.313	2.95	0.00	3.4	96.6	0.0	-1.40	0.76	0.81	4.05	2.9	0.003	0.61	0.0	0.04	16.33	0.00	2.515	3.85	3.05	2.7	97.3	0.0	-0.43	1.18	0.79	0.85	3.98	4536	569	4	0	0	0	0	logfile
✔	8TLU	41373	2024-12-29	2023-07-27	3.8	3.91	3.80	3.9	0.003	0.54	0.0	0.04	12.89	0.00	2.061	7.96	0.00	1.6	98.4	0.0	1.57	0.58	0.79	1.40	3.9	0.003	0.51	0.0	0.04	14.80	0.00	2.451	8.41	1.22	2.5	97.5	0.0	2.00	0.95	0.60	0.79	1.47	11180	698	2	0	0	0	5703	logfile
✔	8K7T	36941	2024-12-28	2023-07-27	3.71	3.98	3.77	4.0	0.005	0.85	5.0	0.05	18.71	0.00	2.026	12.17	0.61	6.2	93.5	0.4	0.17	0.66	0.73	1.27	3.9	0.004	0.84	0.0	0.05	16.94	0.00	2.499	11.44	3.05	6.8	92.9	0.3	-0.47	1.47	0.69	0.78	1.87	8948	1084	13	0	23	0	0	logfile

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