Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K7S	36940	2024-12-27	2023-07-27	3.51	3.68	3.44	3.7	0.002	0.53	0.0	0.04	8.56	0.00	2.263	8.04	0.95	7.4	92.2	0.4	0.24	0.65	0.67	0.85	3.7	0.004	0.74	0.0	0.05	14.59	0.01	2.501	9.26	4.60	8.3	91.1	0.6	-0.58	0.84	0.70	0.74	1.19	6645	800	9	0	18	0	0	logfile
✔	8K7T	36941	2024-12-28	2023-07-27	3.71	3.98	3.77	4.0	0.005	0.85	5.0	0.05	18.71	0.00	2.026	12.17	0.61	6.2	93.5	0.4	0.17	0.66	0.73	1.27	3.9	0.004	0.84	0.0	0.05	16.94	0.00	2.499	11.44	3.05	6.8	92.9	0.3	-0.47	1.47	0.69	0.78	1.87	8948	1084	13	0	23	0	0	logfile
✔	8K7A	36936	2024-12-28	2023-07-26	4.2	6.79	4.47	6.7	0.007	1.46	2.0	0.07	14.73	0.01	1.952	7.00	0.30	6.0	93.3	0.7	-3.62	0.70	0.75	—	6.6	0.003	0.75	0.0	0.04	13.95	0.00	1.992	10.03	0.00	4.0	95.7	0.3	-0.12	0.57	0.70	0.79	—	8918	1126	4	0	4	0	0	logfile
✘	8K77	36935	2024-12-28	2023-07-26	3.11	3.30	—	3.4	0.008	0.99	0.0	0.05	16.52	0.00	2.160	9.40	0.00	3.3	96.7	0.0	0.80	0.60	0.79	2.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8192	1012	4	0	6	0	0	logfile
✔	8PZ2	18035	2024-12-30	2023-07-26	4.2	3.68	4.11	3.8	0.006	0.70	0.0	0.05	14.68	0.00	2.090	11.85	0.07	8.9	91.1	0.0	-1.00	0.73	0.83	—	3.8	0.003	0.60	0.0	0.04	14.56	0.00	2.509	7.28	0.14	6.5	93.5	0.0	-0.59	0.79	0.73	0.83	—	13121	1678	6	0	0	0	0	logfile
✔	8PZ1	18034	2024-12-30	2023-07-26	4.1	3.55	3.95	3.6	0.029	0.59	0.0	0.04	14.13	0.00	2.194	9.71	0.20	5.8	94.1	0.1	-0.57	0.69	0.80	—	3.6	0.003	0.58	0.0	0.04	14.45	0.00	2.474	7.55	0.00	5.5	94.5	0.0	-0.51	0.31	0.69	0.80	—	13849	1776	6	0	0	0	0	logfile
✔	8K7C	36938	2024-12-28	2023-07-26	3.9	4.56	4.09	4.5	0.009	0.96	0.0	0.05	13.87	0.01	1.837	13.49	0.21	8.8	91.2	0.0	-1.19	0.66	0.84	2.01	4.5	0.003	0.63	0.0	0.04	16.50	0.00	1.931	5.91	2.36	4.9	95.1	0.0	0.62	0.45	0.61	0.80	1.53	9271	1174	4	0	6	0	0	logfile
✔	8K6K	36921	2024-12-28	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.35	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.004	1.08	0.0	0.06	17.50	0.00	1.802	6.59	1.02	4.2	95.8	0.0	0.95	0.23	0.76	0.90	4.63	8593	1088	5	0	6	0	0	logfile
✔	8K6L	36922	2024-12-27	2023-07-25	2.92	3.27	2.96	3.2	0.005	1.00	1.0	0.09	17.75	0.02	2.297	6.71	2.17	5.0	95.0	0.0	-2.44	0.63	0.80	2.79	3.2	0.003	0.63	0.0	0.05	15.28	0.00	2.555	2.44	2.89	3.3	96.7	0.0	1.46	0.59	0.61	0.82	3.26	4155	547	3	0	4	0	0	logfile
✔	8TKP	41356	2024-12-31	2023-07-25	2.9	3.69	3.00	3.2	0.005	0.91	3.0	0.05	16.84	0.01	1.152	7.90	0.94	2.1	97.9	0.0	2.30	0.59	0.61	2.02	3.3	0.003	0.76	0.0	0.04	15.78	0.00	2.217	8.04	1.47	2.0	98.0	0.0	1.88	2.00	0.64	0.82	1.63	14666	1698	14	0	54	0	0	logfile
✔	8TKQ	41357	2024-12-31	2023-07-25	2.5	2.25	2.47	2.0	0.007	0.66	0.0	0.04	13.51	0.00	2.166	6.40	0.00	1.9	98.1	0.0	-1.02	0.78	0.80	4.01	2.0	0.004	0.53	0.0	0.04	16.27	0.00	2.472	4.54	2.02	0.9	99.1	0.0	1.99	0.92	0.81	0.83	2.99	15950	2024	11	0	0	0	0	logfile
✘	8K6N	36924	2024-12-28	2023-07-25	3.2	2.28	3.18	2.1	0.004	0.66	0.0	0.05	13.23	0.00	2.211	11.71	0.10	5.7	94.3	0.0	0.15	0.71	0.69	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9291	1186	6	0	0	0	0	logfile
✔	8K66	36918	2024-12-28	2023-07-25	2.53	2.66	2.51	2.7	0.006	1.05	0.0	0.20	19.61	0.00	1.997	8.02	3.20	1.6	98.4	0.0	-0.42	0.77	0.89	4.68	2.7	0.002	0.52	0.0	0.04	15.62	0.00	2.275	5.37	1.15	2.2	97.8	0.0	2.63	1.15	0.71	0.89	4.97	7620	886	6	0	16	130	0	logfile
✔	8K69	36919	2024-12-28	2023-07-25	2.33	2.41	2.31	2.4	0.007	0.94	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	2.4	0.002	0.55	0.0	0.04	15.82	0.00	2.289	3.96	1.78	2.9	97.1	0.0	2.61	1.12	0.74	0.89	5.36	7744	916	6	0	18	126	0	logfile
✔	8K6J	36920	2024-12-28	2023-07-25	2.77	3.51	2.84	3.3	0.030	1.26	0.0	0.49	17.76	0.01	2.130	8.32	2.49	4.1	95.9	0.0	0.88	0.76	0.86	3.44	3.3	0.005	1.09	0.0	0.06	17.36	0.00	1.792	6.89	1.93	4.5	95.5	0.0	0.76	0.27	0.75	0.85	3.53	8580	1087	5	0	6	0	0	logfile
✔	8TKo	41355	2024-12-31	2023-07-25	3.05	3.87	3.11	3.5	0.002	0.48	0.0	0.04	14.07	0.00	2.204	6.16	1.25	4.7	95.3	0.1	0.81	0.88	0.86	2.50	3.5	0.003	0.52	0.0	0.04	14.45	0.00	2.616	4.85	1.53	5.2	94.8	0.1	1.01	3.79	0.89	0.88	2.65	14282	1903	3	0	0	0	0	logfile
✔	8K6o	36925	2024-12-28	2023-07-25	3.3	2.34	3.29	3.2	0.002	0.58	0.0	0.04	12.87	0.00	2.255	6.19	0.10	1.8	98.2	0.0	2.01	0.72	0.65	2.18	2.2	0.003	0.63	0.0	0.04	15.83	0.00	2.527	6.62	1.66	2.7	97.3	0.0	1.57	0.74	0.75	0.76	2.25	9333	1183	6	0	0	0	0	logfile
✔	8K6M	36923	2024-12-28	2023-07-25	3.3	2.42	3.36	2.2	0.005	0.72	3.0	0.05	12.80	0.01	2.085	8.51	0.29	5.4	94.2	0.3	0.45	0.75	0.75	2.41	2.2	0.003	0.63	0.0	0.04	15.58	0.00	2.410	5.44	2.83	5.1	94.9	0.0	0.64	0.39	0.76	0.77	2.06	9327	1182	6	0	0	0	0	logfile
✔	8TJX	41313	2024-12-28	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.62	0.0	0.04	24.02	0.01	1.836	9.60	0.00	0.0	0.0	0.0	—	0.82	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8TJU	41311	2024-12-29	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.74	0.01	1.794	24.14	0.00	0.0	0.0	0.0	—	0.40	0.94	0.91	—	8771	0	2	409	27	0	0	logfile

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