Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCS	38253	2025-05-09	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.002	0.51	0.0	0.04	16.28	0.00	2.481	4.51	2.35	2.2	97.8	0.0	1.71	0.89	0.49	0.92	5.39	3360	418	2	0	3	20	0	logfile
✔	8XD1	38262	2025-05-09	2023-12-10	2.96	3.13	1.03	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.002	0.55	0.0	0.04	17.32	0.01	2.496	5.77	0.88	2.9	97.1	0.0	1.60	0.46	0.42	0.88	2.94	3307	416	2	0	1	9	0	logfile
✔	8REE	19084	2025-05-26	2023-12-10	3.8	4.28	3.79	4.4	0.003	0.64	0.0	0.04	19.58	0.01	1.936	11.03	0.38	5.7	94.3	0.1	-0.72	0.61	0.35	-0.14	3.9	0.004	0.81	1.0	0.04	19.86	0.00	1.967	14.31	2.21	6.0	94.0	0.1	-0.98	1.57	0.88	0.82	1.02	28605	3617	10	103	3	0	0	logfile
✔	8XD9	38270	2025-05-11	2023-12-10	2.8	3.48	2.75	3.3	0.005	0.74	0.0	0.05	12.44	0.01	2.428	9.02	1.10	2.7	97.3	0.0	0.54	0.65	0.85	3.34	3.3	0.003	0.66	0.0	0.04	14.26	0.00	2.480	7.78	0.49	2.9	97.1	0.0	2.50	0.38	0.66	0.86	2.50	7599	993	3	0	0	0	0	logfile
✔	8XCW	38257	2025-05-09	2023-12-10	2.87	3.04	1.35	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.002	0.50	0.0	0.04	16.93	0.00	2.442	4.83	0.88	2.7	97.3	0.0	1.93	0.41	0.48	0.91	3.23	3347	416	2	0	2	17	0	logfile
✔	8REA	19080	2025-05-26	2023-12-10	3.4	3.79	3.45	3.4	0.003	0.60	0.0	0.04	18.95	0.01	2.108	8.71	0.23	5.6	94.4	0.0	-0.46	0.79	0.76	1.73	3.4	0.003	0.60	0.0	0.04	18.98	0.00	1.996	6.93	2.95	6.0	94.0	0.0	0.18	2.02	0.88	0.87	1.72	28821	3668	10	100	3	0	0	logfile
✔	8XD0	38261	2025-05-09	2023-12-10	2.83	3.06	1.34	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.003	0.53	0.0	0.04	17.81	0.00	2.557	5.56	0.88	2.9	96.9	0.2	1.58	0.36	0.46	0.90	3.72	3357	417	2	0	2	14	0	logfile
✔	8XDH	38278	2025-05-11	2023-12-10	3.1	3.21	2.98	3.2	0.010	0.94	0.0	0.06	12.35	0.01	2.304	11.23	0.00	3.4	96.6	0.0	1.08	0.49	0.72	3.77	3.2	0.004	0.57	0.0	0.04	14.29	0.00	2.586	8.39	2.15	3.7	96.3	0.0	1.98	0.37	0.69	0.87	3.37	8310	1074	6	0	15	0	0	logfile
✔	8XDA	38271	2025-05-11	2023-12-10	3.0	3.46	3.00	3.4	0.008	0.86	3.0	0.06	12.75	0.01	2.291	10.69	0.98	3.1	96.9	0.0	0.56	0.58	0.79	3.43	3.4	0.003	0.58	0.0	0.04	14.05	0.00	2.586	9.72	1.71	2.6	97.4	0.0	1.90	0.47	0.64	0.84	2.95	7620	984	9	0	6	6	0	logfile
✔	8XCT	38254	2025-05-09	2023-12-10	2.87	3.06	1.03	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.003	0.53	0.0	0.04	16.43	0.00	2.474	4.22	0.88	2.9	96.9	0.2	1.65	1.73	0.45	0.90	4.16	3358	417	2	0	1	28	0	logfile
✔	8XCo	38249	2025-05-09	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.002	0.50	0.0	0.04	17.21	0.00	2.446	4.08	0.88	3.1	96.9	0.0	2.03	0.55	0.50	0.93	4.48	3335	416	2	0	1	14	0	logfile
✔	8REB	19081	2025-05-26	2023-12-10	3.4	3.95	3.51	4.1	0.005	0.71	0.0	0.04	19.20	0.01	2.006	10.84	0.38	6.7	93.3	0.0	-0.58	0.63	0.34	0.40	3.5	0.005	1.04	1.0	0.04	19.65	0.01	1.904	16.86	1.99	6.0	94.0	0.1	-0.58	5.12	0.88	0.81	0.94	28681	3638	10	101	3	0	0	logfile
✔	8XDE	38275	2025-05-11	2023-12-10	2.3	3.03	2.42	2.9	0.005	0.53	0.0	0.04	14.68	0.01	2.152	6.25	0.00	3.0	97.0	0.0	1.44	0.66	0.91	3.73	2.9	0.003	0.51	0.0	0.04	14.99	0.00	2.619	4.95	1.27	2.7	97.3	0.0	2.69	0.26	0.53	0.84	3.63	8010	1035	3	0	0	0	0	logfile
✔	8XCV	38256	2025-05-09	2023-12-10	2.83	3.05	1.05	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.81	0.00	2.549	5.01	0.29	2.7	97.3	0.0	1.92	0.85	0.48	0.91	4.15	3310	415	2	0	1	7	0	logfile
✔	8RED	19083	2025-05-26	2023-12-10	3.9	4.13	3.86	3.8	0.005	0.68	0.0	0.04	19.76	0.01	2.088	10.12	0.41	6.4	93.5	0.0	-0.58	0.80	0.75	1.60	3.8	0.005	0.65	0.0	0.04	19.77	0.00	1.932	8.96	3.40	6.3	93.7	0.0	-0.10	1.18	0.88	0.85	1.49	28878	3617	10	105	3	0	0	logfile
✔	8XCM	38247	2025-05-12	2023-12-09	3.08	3.84	3.14	3.7	0.030	1.38	0.0	0.46	17.72	0.01	2.118	18.72	0.68	4.8	95.2	0.0	-0.04	0.75	0.83	2.38	3.7	0.005	1.40	0.0	0.06	17.60	0.00	1.804	11.85	3.50	4.4	95.6	0.0	0.46	0.50	0.74	0.82	2.42	8605	1089	5	0	6	0	0	logfile
✔	8XCi	38244	2025-05-12	2023-12-09	3.57	3.94	3.60	3.9	0.017	2.34	11.0	0.11	19.30	0.01	1.529	43.22	14.39	14.1	82.6	3.3	-3.74	0.52	0.82	0.99	3.9	0.003	0.74	0.0	0.04	18.00	0.01	2.379	11.82	4.48	7.1	92.4	0.4	-1.78	0.52	0.50	0.73	1.74	8842	1143	3	0	0	0	0	logfile
✘	8XCN	38248	2025-05-12	2023-12-09	3.02	3.72	3.09	3.7	0.031	1.70	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8601	1089	5	0	6	0	0	logfile
✔	8XCG	38242	2025-05-24	2023-12-09	3.46	3.58	3.49	3.5	0.016	2.04	11.0	0.10	18.17	0.01	1.777	15.81	8.53	13.6	83.7	2.7	-3.83	0.79	0.89	2.42	3.5	0.003	0.73	0.0	0.05	17.66	0.00	2.402	7.99	3.99	9.9	89.6	0.5	-1.92	1.16	0.79	0.86	2.19	25941	3312	18	0	3	0	0	logfile
✔	8XCJ	38245	2025-05-20	2023-12-09	2.98	3.11	2.97	3.1	0.004	0.70	6.0	0.05	18.49	0.00	2.138	9.20	6.95	3.3	96.1	0.6	-0.54	0.72	0.87	3.86	3.1	0.003	0.58	0.0	0.05	18.27	0.00	2.480	6.98	4.44	3.9	95.8	0.3	-0.50	0.23	0.75	0.88	4.12	19809	2526	6	0	0	0	0	logfile

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