Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8WM3	37639	2025-05-21	2023-10-02	3.34	4.50	3.37	3.7	0.006	0.87	0.0	0.05	19.23	0.02	2.169	8.51	0.91	4.1	95.9	0.0	0.99	0.74	0.85	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21616	2642	20	0	30	0	0	logfile
✔	8QPQ	18559	2025-05-26	2023-10-02	2.7	3.35	2.54	3.1	0.011	1.60	32.0	0.12	14.74	0.01	1.777	0.93	0.82	3.5	96.5	0.0	-0.65	0.60	0.90	4.10	3.1	0.004	0.64	0.0	0.05	16.46	0.00	1.958	7.49	1.22	2.4	97.5	0.1	0.09	1.76	0.57	0.89	3.55	28263	3683	30	0	53	0	0	logfile
✔	8QPG	18550	2025-05-16	2023-10-02	2.36	3.26	1.85	3.0	0.012	1.50	15.0	0.11	14.87	0.01	1.825	1.74	0.31	2.5	97.5	0.0	-0.54	0.80	0.92	5.16	3.0	0.006	0.61	0.0	0.05	16.51	0.00	1.956	6.54	2.58	2.3	97.7	0.0	-0.19	0.45	0.75	0.90	4.42	14550	1920	18	0	24	0	0	logfile
✔	8QPK	18555	2025-05-27	2023-10-02	4.2	3.88	3.99	3.5	0.002	0.49	0.0	0.14	17.28	0.00	2.209	9.47	0.07	3.2	96.8	0.0	0.95	0.69	0.73	—	3.5	0.002	0.53	0.0	0.04	16.96	0.00	2.044	8.63	0.00	3.6	96.4	0.0	0.69	0.34	0.70	0.73	—	29527	3974	17	207	1	0	0	logfile
✔	8WLU	37632	2025-05-25	2023-10-01	2.87	2.89	2.77	2.8	0.005	0.90	0.0	0.06	18.01	0.01	1.919	5.60	2.22	2.5	97.5	0.0	0.13	0.84	0.88	3.80	2.8	0.003	0.65	0.0	0.05	14.08	0.00	2.476	3.36	2.64	2.7	97.3	0.0	0.06	1.59	0.84	0.88	3.64	27438	3318	54	0	120	0	0	logfile
✔	8WLY	37635	2025-05-22	2023-10-01	3.96	3.42	3.83	3.3	0.005	0.89	0.0	0.06	15.95	0.01	2.208	11.71	1.06	4.5	95.4	0.1	-0.56	0.76	0.73	1.49	3.3	0.003	0.69	0.0	0.05	15.47	0.00	2.389	9.00	3.27	4.6	95.3	0.1	-0.50	1.17	0.76	0.75	1.18	22598	2808	22	0	54	0	0	logfile
✔	8QPF	18549	2025-05-12	2023-10-01	2.53	3.55	2.56	3.3	0.005	0.84	0.0	0.05	14.75	0.01	2.257	3.31	0.75	2.3	97.5	0.3	-0.50	0.78	0.84	3.52	3.3	0.003	0.60	0.0	0.04	15.68	0.00	2.518	7.24	1.28	2.5	97.2	0.3	2.87	1.03	0.65	0.84	3.35	9085	1167	6	0	0	202	0	logfile
✔	8UEE	42161	2025-05-25	2023-10-01	3.2	3.40	3.18	3.5	0.011	0.63	0.0	0.05	14.50	0.00	1.893	6.69	0.43	2.7	97.3	0.0	0.29	0.64	0.81	2.25	3.5	0.005	0.66	0.0	0.05	15.93	0.00	1.834	5.14	1.66	3.5	96.5	0.0	0.76	1.15	0.64	0.82	1.85	25924	3285	19	0	21	1	0	logfile
✔	8WLJ	37621	2025-05-09	2023-09-30	3.6	3.72	3.64	3.7	0.005	0.82	1.0	0.05	14.05	0.01	2.283	8.82	0.00	2.5	97.5	0.0	0.69	0.50	0.75	2.07	3.7	0.003	0.71	0.0	0.04	16.75	0.00	2.504	8.33	3.01	2.3	97.7	0.0	1.43	1.06	0.49	0.73	2.03	4035	530	2	0	0	0	0	logfile
✔	8WLo	37626	2025-05-30	2023-09-30	2.62	3.59	2.69	2.8	0.004	0.69	0.0	0.05	16.70	0.00	2.086	8.36	0.60	3.3	96.7	0.0	0.17	0.83	0.70	2.23	2.9	0.003	0.64	0.0	0.05	15.42	0.00	2.330	5.90	1.87	3.2	96.8	0.0	0.40	0.41	0.88	0.89	2.51	30464	3784	20	0	50	0	0	logfile
✔	8QP9	18545	2025-05-23	2023-09-30	4.1	3.44	3.97	3.3	0.002	0.48	0.0	0.15	16.83	0.00	2.204	4.77	0.00	3.1	96.9	0.0	0.17	0.58	0.68	—	3.3	0.004	0.61	0.0	0.04	16.34	0.00	2.039	5.39	0.00	7.7	92.3	0.0	-0.31	0.26	0.61	0.71	—	25123	4023	17	184	1	0	0	logfile
✔	8WLM	37624	2025-05-09	2023-09-30	3.57	3.69	3.72	3.8	0.004	0.80	0.0	0.05	14.40	0.00	2.198	10.34	0.00	3.4	96.6	0.0	0.52	0.43	0.74	1.11	3.8	0.003	0.72	0.0	0.04	16.56	0.00	2.608	11.92	2.04	4.0	96.0	0.0	1.17	0.48	0.44	0.74	1.16	2804	382	2	0	1	0	0	logfile
✔	8WLL	37623	2025-05-09	2023-09-30	3.74	3.82	3.77	3.9	0.024	1.06	0.0	0.10	13.07	0.01	2.238	10.14	0.00	2.9	97.1	0.0	0.58	0.50	0.76	1.39	3.8	0.004	0.91	0.0	0.05	15.88	0.00	2.545	10.68	5.40	3.4	96.6	0.0	0.76	1.28	0.49	0.77	0.17	2815	389	2	0	1	0	0	logfile
✔	8WLK	37622	2025-05-09	2023-09-30	3.37	3.55	3.43	3.6	0.006	0.91	0.0	0.05	15.66	0.01	2.227	9.42	0.00	2.6	97.4	0.0	-0.01	0.44	0.72	1.86	3.6	0.004	0.75	0.0	0.04	17.49	0.00	2.509	10.62	6.31	2.1	97.9	0.0	0.91	1.04	0.43	0.74	2.21	2873	383	2	0	1	0	0	logfile
✔	8WLR	37629	2025-05-10	2023-09-30	3.12	3.43	3.11	3.3	0.003	0.55	0.0	0.04	16.12	0.00	2.266	4.86	0.14	1.9	98.1	0.0	0.16	0.70	0.88	3.10	3.3	0.002	0.49	0.0	0.04	16.21	0.00	2.332	2.87	1.16	1.3	98.7	0.0	0.85	0.35	0.73	0.89	2.80	6431	792	4	0	2	0	0	logfile
✔	8WLA	37614	2025-05-15	2023-09-29	3.4	3.89	3.57	8.0	0.003	0.56	0.0	0.04	14.62	0.01	1.295	5.55	0.71	2.1	97.9	0.0	2.13	0.26	0.03	0.24	3.7	0.004	0.84	1.0	0.05	16.58	0.01	2.354	19.63	2.47	4.2	95.8	0.0	0.16	1.59	0.39	0.26	0.29	13360	1670	2	0	0	0	0	logfile
✔	8WL6	37612	2025-05-14	2023-09-29	3.16	3.38	3.22	3.4	0.003	0.62	0.0	0.04	16.84	0.00	2.204	6.76	0.32	5.6	94.1	0.3	0.18	0.65	0.79	1.50	3.4	0.003	0.58	0.0	0.04	17.21	0.00	2.489	5.37	2.49	5.3	94.7	0.0	0.84	0.39	0.62	0.78	1.29	11922	1489	1	0	0	0	0	logfile
✔	8QP5	18543	2025-05-15	2023-09-29	4.4	3.76	4.19	3.6	0.003	0.63	0.0	0.04	13.40	0.00	2.113	15.18	0.17	8.0	92.0	0.0	-1.49	0.69	0.79	—	3.6	0.005	0.70	0.0	0.05	13.62	0.00	2.458	12.28	0.09	8.9	91.1	0.0	-1.93	0.36	0.69	0.80	—	12554	1746	6	0	0	0	0	logfile
✔	8QoT	18541	2025-05-11	2023-09-29	3.2	2.66	3.10	2.2	0.004	0.63	0.0	0.04	12.78	0.00	2.219	6.66	0.00	3.7	96.3	0.0	0.08	0.79	0.77	3.11	3.0	0.004	0.67	0.0	0.04	15.02	0.00	2.584	7.13	1.93	3.5	96.5	0.0	0.91	1.15	0.79	0.81	2.77	7493	968	5	0	0	0	0	logfile
✔	8UD4	42146	2025-05-18	2023-09-28	3.25	3.46	3.27	3.5	0.003	0.56	0.0	0.05	17.65	0.00	2.204	7.62	0.43	1.6	98.4	0.0	0.49	0.69	0.80	3.51	3.5	0.003	0.54	0.0	0.04	17.45	0.00	2.446	5.51	1.61	2.0	98.0	0.0	0.48	0.99	0.73	0.82	3.32	17498	2076	8	46	0	0	0	logfile

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