Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WD8	37457	2025-05-15	2023-09-14	2.9	3.05	2.88	3.1	0.004	0.70	0.0	0.05	19.79	0.01	1.852	3.54	0.65	3.5	96.5	0.0	-1.91	0.77	0.89	2.83	3.1	0.002	0.50	0.0	0.04	19.92	0.00	1.961	4.98	1.73	2.7	97.3	0.0	1.08	0.92	0.70	0.88	3.19	13667	1500	9	64	7	0	0	logfile
✔	8U71	41965	2025-05-17	2023-09-14	3.9	4.31	3.97	4.1	0.005	0.78	0.0	0.05	16.22	0.00	2.257	7.27	0.06	2.8	97.2	0.0	0.94	0.70	0.82	0.75	4.1	0.003	0.64	0.0	0.04	15.33	0.00	2.502	8.72	1.41	2.6	97.4	0.0	2.25	1.15	0.69	0.82	0.57	16033	1990	4	0	7	0	0	logfile
✔	8U75	41969	2025-05-16	2023-09-14	3.1	3.29	3.12	3.3	0.004	0.67	0.0	0.04	19.44	0.00	2.280	5.74	0.00	2.2	97.8	0.0	1.08	0.64	0.79	1.81	3.3	0.003	0.55	0.0	0.04	16.37	0.00	2.503	5.94	4.06	2.6	97.4	0.0	2.21	0.25	0.66	0.82	1.41	14656	1814	4	0	7	0	0	logfile
✔	8WCW	37450	2025-05-12	2023-09-14	3.11	3.62	3.20	3.5	0.006	0.73	0.0	0.04	14.37	0.00	2.219	9.14	0.21	10.0	90.0	0.0	-3.12	0.65	0.85	2.27	3.5	0.003	0.61	0.0	0.04	15.70	0.00	2.572	6.35	1.99	7.3	92.7	0.0	0.25	0.93	0.60	0.82	1.78	9062	1189	2	0	0	0	0	logfile
✔	8WCN	37444	2025-05-10	2023-09-13	3.2	2.54	2.94	3.1	0.004	0.72	0.0	0.04	16.65	0.00	1.902	13.05	0.50	2.7	97.3	0.0	0.54	0.72	0.71	1.25	3.0	0.004	0.76	0.0	0.04	17.31	0.00	1.903	10.59	5.16	3.3	96.7	0.0	1.30	0.55	0.77	0.74	1.10	6086	757	4	0	6	0	0	logfile
✔	8WCS	37448	2025-05-13	2023-09-13	3.1	3.46	3.32	3.5	0.004	0.77	0.0	0.05	21.59	0.01	2.148	4.70	0.74	8.6	91.4	0.0	-2.55	0.70	0.76	1.66	3.5	0.002	0.58	0.0	0.04	21.21	0.00	2.218	6.39	2.74	8.9	91.1	0.0	-0.16	0.33	0.67	0.77	1.47	10096	1044	3	66	1	0	0	logfile
✔	8QJF	18446	2025-05-19	2023-09-13	2.86	3.33	2.60	3.1	0.005	0.58	0.0	0.05	10.05	0.00	2.238	3.68	0.57	1.6	98.4	0.0	3.35	0.65	0.74	2.87	3.0	0.006	0.89	3.0	0.04	13.80	0.00	2.250	5.79	1.04	1.5	98.5	0.0	3.59	0.71	0.64	0.91	2.98	19164	2352	24	0	12	0	0	logfile
✔	8U66	41946	2025-05-27	2023-09-13	2.21	2.31	2.27	2.3	0.004	0.56	0.0	0.09	16.75	0.00	1.869	2.66	0.28	3.4	96.6	0.0	2.01	0.71	0.83	4.97	2.3	0.004	0.64	0.0	0.04	17.24	0.00	1.874	5.01	2.30	3.6	96.4	0.0	0.98	0.27	0.77	0.87	5.05	29365	3584	24	0	16	981	0	logfile
✔	8U63	41942	2025-05-11	2023-09-13	3.01	2.25	2.99	2.0	0.003	0.56	0.0	0.04	17.94	0.00	2.151	8.88	0.48	2.8	97.2	0.0	-0.74	0.77	0.79	2.41	2.0	0.003	0.61	0.0	0.04	18.51	0.00	2.576	8.49	3.10	2.2	97.8	0.0	1.13	0.37	0.77	0.79	2.54	7758	984	4	0	2	0	0	logfile
✔	8QJJ	18448	2025-05-10	2023-09-13	3.35	3.35	3.18	3.3	0.012	1.98	0.0	0.10	12.60	0.01	2.538	0.43	0.00	2.3	97.7	0.0	-2.06	0.33	0.77	5.23	3.3	0.003	0.61	0.0	0.05	16.37	0.00	2.500	3.56	1.26	5.0	95.0	0.0	-1.82	2.31	0.34	0.79	4.47	7032	450	6	0	0	0	3588	logfile
✔	8WCP	37445	2025-05-09	2023-09-13	3.28	3.36	2.32	3.4	0.005	0.83	0.0	0.06	10.78	0.00	2.482	16.18	0.00	11.1	88.9	0.0	-5.74	0.39	0.86	4.76	3.4	0.003	0.58	0.0	0.05	13.66	0.00	2.625	3.35	2.00	8.6	91.4	0.0	-3.88	0.95	0.38	0.87	5.46	1536	168	9	0	57	0	0	logfile
✔	8WCQ	37446	2025-05-16	2023-09-13	3.35	3.66	3.30	3.6	0.003	0.52	0.0	0.04	22.28	0.01	2.278	5.98	0.00	2.6	97.4	0.0	0.24	0.66	0.67	1.42	3.5	0.005	0.64	0.0	0.05	18.82	0.01	2.474	3.94	1.07	3.3	96.7	0.0	0.61	0.54	0.78	0.86	2.03	14130	1560	10	0	45	0	0	logfile
✔	8U5X	41935	2025-05-10	2023-09-13	2.79	3.27	2.82	3.2	0.008	0.87	0.0	0.05	12.00	0.01	2.428	4.07	0.61	3.4	96.6	0.0	-0.95	0.72	0.82	3.61	3.2	0.004	0.81	0.0	0.05	15.77	0.00	2.539	13.96	1.22	2.3	97.7	0.0	2.18	2.63	0.68	0.80	2.50	4453	569	2	0	1	0	0	logfile
✔	8QJH	18447	2025-05-18	2023-09-13	2.91	3.37	2.83	3.2	0.002	0.41	0.0	0.04	9.69	0.00	2.248	8.45	1.29	1.2	98.8	0.0	3.25	0.59	0.88	3.33	3.3	0.003	0.56	0.0	0.04	15.30	0.00	2.271	5.45	3.28	2.0	98.0	0.0	3.17	0.66	0.61	0.90	2.84	16584	2076	12	0	0	0	0	logfile
✔	8U65	41944	2025-05-11	2023-09-13	3.01	2.26	3.05	1.9	0.003	0.58	0.0	0.04	18.68	0.00	2.164	12.11	0.36	4.8	95.2	0.0	-0.65	0.71	0.67	1.30	1.9	0.003	0.65	0.0	0.04	18.95	0.01	2.437	10.46	3.14	4.2	95.8	0.0	-0.84	0.74	0.71	0.67	0.93	7636	967	4	0	2	0	0	logfile
✘	8WCR	37447	2025-05-16	2023-09-13	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14615	1560	15	0	50	270	0	logfile
✔	8U62	41941	2025-05-11	2023-09-13	3.3	2.42	3.25	2.1	0.003	0.61	0.0	0.04	18.21	0.00	2.175	8.41	0.59	2.8	97.2	0.0	0.96	0.73	0.77	2.12	2.1	0.005	0.61	0.0	0.04	18.57	0.00	2.444	7.96	5.05	3.5	96.5	0.0	1.47	0.73	0.73	0.77	1.99	7884	998	4	0	2	0	0	logfile
✔	8QJU	18449	2025-05-12	2023-09-13	3.5	2.71	3.48	3.8	0.007	1.45	1.0	0.08	16.45	0.01	2.243	31.96	10.42	8.8	89.1	2.1	-2.58	0.83	0.85	2.37	3.8	0.003	0.75	0.0	0.04	17.04	0.00	2.510	10.38	2.74	7.8	91.7	0.5	-0.37	2.25	0.77	0.77	2.17	8578	1045	1	0	0	0	0	logfile
✔	8U64	41943	2025-05-11	2023-09-13	3.13	2.26	3.11	1.9	0.004	0.59	0.0	0.04	18.15	0.00	2.121	11.26	0.48	5.5	94.5	0.0	-0.22	0.75	0.74	2.09	1.9	0.004	0.64	0.0	0.04	18.31	0.01	2.525	10.08	3.25	5.0	95.0	0.0	0.22	0.28	0.76	0.75	2.23	7674	970	4	0	2	0	0	logfile
✔	8U5V	41934	2025-05-09	2023-09-13	2.77	3.23	2.79	3.2	0.008	1.07	1.0	0.06	11.86	0.01	2.429	2.55	1.24	2.0	98.0	0.0	-0.23	0.72	0.83	3.42	3.1	0.004	0.82	0.0	0.05	16.02	0.00	2.434	12.77	1.45	1.1	98.9	0.0	2.48	1.74	0.70	0.83	3.04	4397	556	2	0	2	0	0	logfile

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