Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W8Q	37356	2025-05-11	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	2.9	0.003	0.60	0.0	0.04	16.35	0.00	2.459	6.46	3.42	2.2	97.8	0.0	1.22	1.10	0.72	0.86	3.62	8168	1044	5	0	0	0	0	logfile
✔	8U1X	41837	2025-05-13	2023-09-04	2.7	3.42	2.79	3.2	0.006	0.82	0.0	0.05	13.61	0.01	1.988	3.48	0.00	3.1	96.9	0.1	-5.72	0.78	0.85	3.50	3.2	0.003	0.64	0.0	0.04	15.20	0.00	2.040	4.84	0.57	2.6	97.4	0.0	0.76	1.16	0.76	0.83	2.53	11040	1375	4	0	2	0	0	logfile
✔	8W8X	37360	2025-05-11	2023-09-04	2.9	3.21	2.95	3.3	0.007	0.76	0.0	0.05	16.89	0.01	2.057	10.21	2.71	4.3	95.7	0.0	-0.32	0.66	0.85	3.60	3.3	0.004	0.56	0.0	0.04	17.65	0.00	2.286	4.77	2.71	2.8	97.2	0.0	0.63	0.37	0.63	0.84	3.45	7608	977	7	0	1	0	0	logfile
✔	8U1S	41826	2025-05-18	2023-09-02	3.21	3.93	3.32	3.8	0.023	1.95	9.0	0.10	10.17	0.01	1.314	5.29	0.79	6.0	93.3	0.6	-0.28	0.73	0.76	2.59	3.8	0.005	0.84	0.0	0.05	15.44	0.00	2.518	13.05	4.48	7.2	92.4	0.3	-1.68	1.32	0.68	0.77	2.32	17465	2241	16	0	4	0	0	logfile
✔	8U1U	41829	2025-05-13	2023-09-02	3.1	3.41	—	3.3	0.004	0.72	0.0	0.05	13.15	0.01	2.003	6.13	0.00	3.5	96.5	0.0	0.26	0.72	0.82	3.41	3.3	0.003	0.63	0.0	0.04	15.21	0.00	2.483	7.71	2.00	3.3	96.7	0.0	0.37	1.12	0.72	0.84	2.72	9507	1206	6	0	1	0	0	logfile
✔	8U1P	41822	2025-05-10	2023-09-01	3.3	3.24	3.30	3.3	0.005	1.10	0.0	0.09	11.48	0.01	2.265	7.93	0.00	5.2	94.8	0.0	-0.82	0.86	0.76	2.81	1.5	0.005	0.86	0.0	0.05	14.83	0.01	2.364	14.75	3.54	8.6	91.4	0.0	-1.12	0.71	0.89	0.81	2.88	4854	665	8	0	5	0	0	logfile
✔	8U1o	41819	2025-05-17	2023-09-01	3.4	2.61	3.65	3.4	0.005	1.00	0.0	0.06	16.71	0.01	2.225	12.44	0.92	7.7	92.0	0.4	-2.51	0.56	0.72	1.67	1.6	0.003	0.78	0.0	0.05	17.18	0.00	2.360	16.12	4.72	7.9	91.9	0.3	-2.34	0.47	0.56	0.73	1.60	15096	1989	3	0	0	0	0	logfile
✔	8U1Q	41824	2025-05-19	2023-09-01	3.36	3.66	3.42	3.6	0.023	2.08	4.0	0.11	10.36	0.01	2.021	1.42	0.00	4.1	95.0	0.8	-0.75	0.78	0.81	3.32	3.6	0.004	0.86	0.0	0.05	14.52	0.00	2.508	9.28	2.00	7.2	92.6	0.2	-2.07	0.70	0.78	0.83	2.19	19016	2448	16	0	8	0	0	logfile
✔	8W8A	37350	2025-05-11	2023-09-01	2.8	3.15	2.86	3.1	0.008	0.77	1.0	0.05	12.99	0.00	2.280	5.44	0.89	2.8	97.2	0.0	0.81	0.63	0.84	4.00	3.1	0.003	0.57	0.0	0.04	15.64	0.00	2.525	5.81	1.79	2.8	97.2	0.0	1.06	0.38	0.62	0.85	3.66	8260	1045	6	0	1	1	0	logfile
✔	8U1L	41816	2025-05-15	2023-09-01	3.7	5.25	3.73	3.0	0.005	1.07	0.0	0.05	14.74	0.00	1.947	14.42	0.00	2.2	97.8	0.0	0.39	0.91	0.70	0.05	3.6	0.005	0.77	0.0	0.04	15.95	0.00	1.908	19.94	2.52	3.9	96.1	0.0	-0.05	0.56	0.93	0.81	0.19	12595	1543	6	0	4	0	0	logfile
✔	8QEN	18373	2025-05-20	2023-09-01	3.4	2.69	3.48	3.3	0.004	0.54	0.0	0.04	10.63	0.00	2.118	7.73	2.20	5.0	94.9	0.1	0.22	0.75	0.75	2.14	3.3	0.004	0.90	2.0	0.06	15.00	0.00	2.248	9.26	2.81	6.1	93.7	0.1	-0.08	2.69	0.77	0.80	1.90	19007	2363	2	0	1	0	0	logfile
✔	8U1N	41818	2025-05-11	2023-09-01	3.9	4.61	3.84	4.1	0.005	1.17	0.0	0.05	17.98	0.00	1.883	17.84	0.00	4.5	95.5	0.0	-1.18	0.91	0.78	1.29	4.1	0.003	0.66	0.0	0.04	18.28	0.00	1.796	12.55	1.79	4.4	95.6	0.0	-1.00	1.00	0.91	0.79	1.30	8164	994	4	0	4	0	0	logfile
✔	8U1M	41817	2025-05-11	2023-09-01	3.5	5.34	3.49	3.4	0.005	1.17	0.0	0.05	16.52	0.00	1.781	23.45	0.35	5.0	95.0	0.0	-1.18	0.92	0.72	0.71	3.0	0.004	0.74	0.0	0.04	17.36	0.00	1.790	23.13	3.48	6.3	93.7	0.0	-1.50	0.48	0.93	0.76	0.87	7882	957	4	0	4	0	0	logfile
✔	8U1R	41825	2025-05-12	2023-09-01	3.6	3.81	3.62	3.8	0.005	0.78	0.0	0.05	15.16	0.00	2.182	5.32	1.05	3.3	96.7	0.0	-0.29	0.77	0.84	2.91	3.8	0.003	0.59	0.0	0.04	15.91	0.00	2.466	5.86	1.91	3.8	96.2	0.0	0.78	1.01	0.78	0.84	2.56	9126	1197	3	0	0	0	0	logfile
✔	8W88	37348	2025-05-11	2023-09-01	2.6	2.99	2.75	2.9	0.006	0.67	0.0	0.04	14.72	0.01	2.143	4.00	0.34	2.7	97.3	0.0	1.00	0.71	0.87	4.27	3.0	0.002	0.52	0.0	0.04	15.85	0.00	2.430	4.41	2.91	1.7	98.3	0.0	1.60	0.44	0.60	0.85	3.39	8307	1039	6	0	4	0	0	logfile
✔	8W8D	37342	2025-05-22	2023-09-01	2.8	4.08	2.82	3.3	0.007	1.11	24.0	0.07	19.92	0.00	1.262	11.21	7.73	4.7	95.3	0.0	-0.87	0.78	0.70	1.30	3.4	0.004	0.74	0.0	0.04	18.43	0.00	2.381	6.58	1.98	3.8	96.2	0.0	0.48	0.70	0.92	0.88	1.40	23063	2921	19	0	0	29	0	logfile
✔	8QEo	18374	2025-05-19	2023-09-01	3.26	2.53	3.32	3.1	0.005	0.53	0.0	0.04	11.10	0.00	2.018	6.28	2.65	8.6	91.3	0.1	-1.38	0.75	0.71	2.54	3.1	0.003	0.65	0.0	0.04	14.90	0.00	2.139	9.70	2.65	7.2	92.6	0.1	-0.82	0.73	0.77	0.75	1.81	18126	2267	3	0	1	0	0	logfile
✔	8W89	37349	2025-05-11	2023-09-01	3.0	3.35	3.11	3.3	0.006	0.83	0.0	0.06	13.33	0.00	2.334	4.90	0.90	3.4	96.6	0.0	0.85	0.63	0.81	2.98	3.3	0.003	0.62	0.0	0.04	15.96	0.00	2.410	7.35	2.02	2.0	98.0	0.0	0.71	1.27	0.60	0.82	2.64	8230	1043	6	0	1	1	0	logfile
✔	8W87	37347	2025-05-11	2023-09-01	2.8	3.17	2.93	3.2	0.004	0.57	0.0	0.04	15.67	0.01	2.193	3.86	0.45	1.9	98.1	0.0	1.49	0.60	0.86	3.88	3.2	0.003	0.55	0.0	0.04	16.47	0.00	2.484	4.72	2.36	2.1	97.9	0.0	1.45	0.34	0.52	0.82	3.40	8228	1045	6	0	1	0	0	logfile
✔	8W8B	37351	2025-05-12	2023-09-01	3.0	3.35	3.12	3.3	0.005	0.58	0.0	0.04	14.50	0.00	2.063	4.34	0.54	2.3	97.7	0.0	1.35	0.67	0.86	3.99	3.3	0.006	0.65	0.0	0.04	15.40	0.00	2.461	5.43	1.93	3.3	96.7	0.0	1.06	0.30	0.63	0.86	3.43	8734	1096	6	0	7	0	0	logfile

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