Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JDV	61399	2024-11-14	2024-09-01	3.32	3.91	3.55	3.9	0.006	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.003	0.68	0.0	0.04	16.26	0.00	2.295	11.08	4.64	2.4	97.6	0.0	2.00	1.07	0.47	0.73	1.48	3311	435	2	0	1	1	0	logfile
✔	9DER	46794	2024-11-17	2024-08-29	3.9	5.17	4.02	4.0	0.003	0.56	0.0	0.05	15.30	0.00	2.080	5.89	0.90	3.7	96.3	0.0	-0.23	0.86	0.71	0.15	4.1	0.005	0.68	0.0	0.04	11.76	0.00	1.848	13.31	0.77	7.5	92.5	0.0	-0.96	1.80	0.89	0.76	0.30	14207	925	9	0	24	2	6843	logfile
✔	9JA0	61286	2024-11-19	2024-08-23	3.14	3.38	3.16	3.4	0.003	0.67	0.0	0.04	11.92	0.01	1.961	8.89	0.00	2.8	97.2	0.0	-4.28	0.75	0.86	3.05	3.4	0.003	0.53	0.0	0.04	14.29	0.00	2.643	4.79	1.10	4.6	95.4	0.0	0.91	0.94	0.72	0.85	2.72	19716	2628	12	0	0	0	0	logfile
✔	9D9L	46676	2024-11-18	2024-08-21	4.0	3.70	—	3.6	0.012	1.86	15.0	0.10	13.80	0.01	2.522	0.06	0.87	5.4	94.6	0.0	-1.53	0.50	0.65	—	3.6	0.003	0.58	1.0	0.04	15.37	0.00	2.211	3.74	2.12	4.1	95.9	0.0	-1.44	1.70	0.63	0.78	—	49929	3384	12	0	0	0	24441	logfile
✔	9D7K	46607	2024-11-14	2024-08-16	3.0	2.55	3.04	2.9	0.002	0.55	0.0	0.04	17.29	0.00	2.308	9.53	1.60	3.1	96.9	0.0	0.63	0.65	0.67	2.01	2.2	0.005	0.91	0.0	0.05	18.37	0.01	2.494	17.82	2.88	4.8	95.2	0.0	0.36	0.76	0.65	0.72	1.79	2843	359	1	0	0	0	0	logfile
✔	9GG6	51325	2024-11-13	2024-08-13	3.36	3.18	3.07	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.007	0.72	0.0	0.05	17.52	0.00	2.556	4.34	6.02	9.2	90.8	0.0	-2.30	0.53	0.40	0.89	4.37	2142	288	3	0	0	0	0	logfile
✔	9GG0	51319	2024-11-13	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.58	0.0	0.05	15.92	0.00	2.577	2.45	1.47	2.2	97.8	0.0	-2.14	0.33	0.39	0.88	5.59	2385	321	3	0	0	0	0	logfile
✔	9GG1	51320	2024-11-14	2024-08-12	2.26	2.29	2.15	2.2	0.008	1.28	0.0	0.08	14.09	0.01	2.610	1.51	0.00	5.7	94.3	0.0	-2.57	0.45	0.92	7.85	2.2	0.004	0.69	0.0	0.05	15.90	0.00	2.495	3.02	0.81	3.6	95.5	1.0	-2.36	0.91	0.46	0.92	6.83	3232	428	4	0	0	0	0	logfile
✔	9J2N	61099	2024-11-14	2024-08-07	3.3	3.54	3.29	3.6	0.006	0.81	0.0	0.04	16.62	0.01	2.233	13.33	0.00	4.9	95.1	0.0	0.45	0.65	0.86	2.03	3.5	0.003	0.61	0.0	0.04	15.56	0.01	2.510	7.14	1.06	3.9	96.1	0.0	1.27	1.37	0.63	0.88	1.65	3584	468	2	0	1	0	0	logfile
✔	9CZL	46420	2024-11-14	2024-08-05	2.9	3.25	2.64	3.2	0.023	1.95	0.0	0.09	9.53	0.01	2.463	0.52	0.00	5.6	94.4	0.0	-1.27	0.54	0.85	5.46	3.2	0.004	0.78	0.0	0.05	17.30	0.00	2.580	5.09	1.85	6.2	93.8	0.0	-1.60	1.68	0.44	0.84	4.93	5660	740	10	0	0	0	0	logfile
✔	9CZi	46417	2024-11-14	2024-08-05	3.0	3.03	2.88	3.0	0.021	1.92	0.0	0.10	9.10	0.01	2.435	0.79	0.00	7.0	93.0	0.0	-1.72	0.38	0.80	5.58	3.0	0.006	0.71	0.0	0.05	17.71	0.00	2.557	6.07	3.12	7.7	92.3	0.0	-2.24	0.54	0.47	0.87	4.52	5570	730	10	0	0	0	0	logfile
✔	9CZP	46424	2024-11-14	2024-08-05	3.3	3.59	3.27	3.5	0.021	2.01	0.0	0.11	10.68	0.01	2.402	0.40	0.00	7.0	93.0	0.0	-0.29	0.47	0.84	6.05	3.5	0.003	0.59	0.0	0.06	16.45	0.00	2.589	8.55	2.80	7.5	92.5	0.0	-1.30	1.62	0.44	0.84	4.57	5020	680	20	0	0	0	0	logfile
✔	9CZN	46422	2024-11-14	2024-08-05	2.6	2.70	2.56	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.004	0.62	0.0	0.06	19.10	0.00	2.616	7.65	1.80	4.8	95.2	0.0	-1.06	3.21	0.56	0.88	5.85	5020	680	20	0	0	0	0	logfile
✔	9GD3	51247	2024-11-19	2024-08-04	3.0	3.49	2.92	3.1	0.005	0.85	0.0	0.06	24.31	0.01	2.176	1.23	0.07	2.2	97.8	0.0	-0.07	0.78	0.74	3.10	3.1	0.003	0.67	0.0	0.04	24.17	0.00	1.316	6.64	1.13	2.1	97.9	0.0	1.99	1.09	0.86	0.89	2.60	19030	1630	13	284	3	0	0	logfile
✔	9GD0	51238	2024-11-19	2024-08-04	2.8	3.26	—	3.0	0.006	0.84	0.0	0.05	27.26	0.01	2.229	4.41	0.00	0.5	99.5	0.0	-0.62	0.86	0.82	3.22	3.0	0.004	0.65	0.0	0.03	28.08	0.00	2.268	7.19	2.19	1.7	98.3	0.0	2.43	1.33	0.88	0.86	2.27	20207	1253	16	500	0	0	0	logfile
✔	9GCU	51237	2024-11-19	2024-08-02	2.8	3.33	2.68	3.1	0.003	0.67	0.0	0.04	13.27	0.00	2.040	12.45	0.09	2.0	98.0	0.0	0.35	0.86	0.85	2.65	3.1	0.005	0.93	1.0	0.06	15.70	0.00	1.897	11.11	1.35	1.8	98.1	0.0	0.70	0.49	0.87	0.88	2.45	20023	2508	16	0	10	83	0	logfile
✘	9CX6	45979	2024-11-18	2024-07-30	3.2	3.35	3.13	3.5	0.009	1.46	0.0	0.07	12.63	0.01	0.182	28.34	0.00	5.0	95.0	0.0	-4.11	0.47	0.62	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49250	7200	200	0	0	250	0	logfile
✔	9CV6	45956	2024-11-16	2024-07-28	3.12	3.70	3.15	3.6	0.004	0.85	0.0	0.06	11.33	0.01	2.314	3.62	0.00	2.3	97.7	0.0	-1.51	0.87	0.87	4.36	3.5	0.003	0.59	0.0	0.04	13.88	0.00	2.499	4.29	0.79	2.6	97.4	0.0	0.88	1.13	0.84	0.89	3.13	12030	1520	2	0	0	0	0	logfile
✔	9iWQ	60959	2024-11-14	2024-07-25	2.08	2.25	2.08	2.2	0.022	2.14	21.0	0.22	12.56	0.01	2.493	0.18	0.00	1.0	99.0	0.0	1.04	0.22	0.91	6.38	2.2	0.003	0.45	0.0	0.04	13.94	0.00	2.575	0.70	0.32	0.5	99.5	0.0	3.45	0.96	0.21	0.91	5.06	5683	387	1	0	0	0	2830	logfile
✘	9CTS	45917	2024-11-18	2024-07-25	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15623	1880	10	0	9	0	0	logfile

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