Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JR3	61747	2025-07-27	2024-09-29	2.8	2.91	—	98.0	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.69	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	98.0	0.005	0.66	0.0	0.04	15.67	0.00	2.516	8.08	3.01	3.2	96.7	0.1	0.80	0.90	0.49	0.77	2.26	9455	1228	9	0	3	1	0	logfile
✔	9JRi	61756	2025-07-23	2024-09-29	3.43	3.65	3.41	3.6	0.006	0.87	1.0	0.04	19.71	0.01	2.119	9.77	0.30	4.2	95.8	0.0	1.04	0.53	0.75	1.25	3.6	0.003	0.63	1.0	0.04	19.44	0.00	2.538	8.82	6.04	4.0	96.0	0.0	1.82	0.35	0.53	0.75	1.19	3132	385	2	0	1	0	0	logfile
✔	9JRN	61761	2025-07-23	2024-09-29	3.74	3.98	3.73	3.9	0.003	0.59	0.0	0.04	17.66	0.00	2.215	8.19	0.30	3.7	96.3	0.0	1.23	0.54	0.77	1.27	3.9	0.003	0.63	0.0	0.04	17.86	0.00	2.584	9.45	4.52	4.2	95.8	0.0	2.12	0.58	0.56	0.78	1.21	3129	386	2	0	1	0	0	logfile
✔	9JRM	61760	2025-07-23	2024-09-29	3.34	3.55	3.32	3.5	0.007	1.01	0.0	0.06	17.94	0.00	2.229	8.23	0.00	4.0	96.0	0.0	0.97	0.59	0.78	2.18	3.5	0.003	0.59	0.0	0.04	16.22	0.00	2.629	9.65	5.15	4.5	95.5	0.0	1.84	0.27	0.54	0.76	1.72	3134	384	2	0	1	0	0	logfile
✔	9DSo	47148	2025-07-26	2024-09-28	2.85	3.10	2.88	3.2	0.004	0.54	0.0	0.04	13.12	0.00	2.209	6.26	0.00	1.5	98.5	0.0	1.43	0.63	0.83	3.69	3.2	0.005	0.56	0.0	0.04	15.98	0.00	2.312	6.04	2.07	1.7	98.3	0.0	1.85	0.90	0.63	0.84	3.59	8975	1115	4	0	1	0	0	logfile
✔	9JQT	61741	2025-07-24	2024-09-28	2.7	3.06	2.80	3.1	0.005	0.72	0.0	0.05	13.51	0.01	2.209	8.55	0.31	2.0	98.0	0.0	0.51	0.41	0.62	3.55	3.1	0.003	0.54	0.0	0.04	15.19	0.00	2.618	6.84	2.83	1.8	98.2	0.0	0.55	0.33	0.54	0.79	3.25	5669	720	4	0	0	0	0	logfile
✔	9JQP	61732	2025-07-25	2024-09-28	3.34	2.86	3.30	1.3	0.006	0.89	0.0	0.05	15.53	0.01	2.056	15.57	1.25	6.4	93.6	0.0	-2.39	0.85	0.82	2.82	1.3	0.004	0.80	0.0	0.05	16.68	0.00	2.453	7.23	5.33	6.4	93.6	0.0	-1.10	0.75	0.90	0.88	2.68	8175	1052	10	0	6	0	0	logfile
✔	9JQ5	61723	2025-07-30	2024-09-27	3.35	3.61	3.44	3.6	0.010	1.10	1.0	0.05	12.68	0.00	2.221	12.06	1.38	1.2	98.8	0.1	-1.72	0.59	0.53	1.14	3.6	0.003	0.72	0.0	0.04	16.64	0.00	2.529	13.29	2.20	3.1	96.9	0.0	-0.05	1.24	0.69	0.70	0.89	12252	1548	8	0	8	0	0	logfile
✔	9JQ3	61721	2025-07-30	2024-09-27	2.45	2.70	2.52	2.7	0.005	0.87	0.0	0.09	17.53	0.00	2.021	5.95	0.65	1.0	99.0	0.1	-2.05	0.74	0.81	4.36	2.7	0.003	0.58	0.0	0.04	18.45	0.00	2.505	5.66	2.11	2.1	97.9	0.0	1.09	0.63	0.68	0.86	4.41	12052	1548	8	0	4	0	0	logfile
✔	9JQ6	61724	2025-07-28	2024-09-27	3.34	2.91	3.38	1.3	0.005	0.83	0.0	0.05	16.11	0.01	2.201	12.88	1.69	7.2	92.8	0.0	-0.60	0.94	0.90	2.34	1.4	0.004	0.73	0.0	0.05	16.37	0.01	2.394	7.58	3.83	5.3	94.7	0.0	-0.24	1.01	0.94	0.90	2.40	10236	1302	11	0	13	0	0	logfile
✔	9JQ4	61722	2025-07-30	2024-09-27	2.91	3.14	2.98	3.3	0.011	1.13	1.0	0.06	13.58	0.00	1.802	12.47	1.38	1.2	98.8	0.1	-1.72	0.64	0.67	1.98	3.3	0.003	0.66	0.0	0.04	16.67	0.00	2.475	9.19	1.79	2.0	98.0	0.0	0.53	1.11	0.63	0.76	2.28	12248	1548	8	0	8	0	0	logfile
✔	9GVK	51637	2025-07-27	2024-09-25	3.5	3.08	3.16	3.2	0.004	0.71	0.0	0.05	18.62	0.00	2.026	8.11	0.39	5.7	94.3	0.0	-0.64	0.72	0.83	1.37	3.2	0.003	0.62	0.0	0.04	18.40	0.00	2.035	7.19	3.00	6.2	93.8	0.0	0.11	1.06	0.71	0.81	1.35	9673	1256	6	0	4	0	0	logfile
✔	9JoZ	61690	2025-07-23	2024-09-25	2.94	3.15	2.95	3.1	0.003	0.51	0.0	0.04	16.76	0.01	2.299	8.62	0.89	3.9	96.1	0.0	1.34	0.56	0.80	2.25	3.1	0.003	0.47	0.0	0.04	16.85	0.00	2.548	7.99	2.38	3.4	96.6	0.0	2.18	0.35	0.55	0.80	1.84	3143	390	1	0	0	0	0	logfile
✘	9JN9	61620	2025-07-31	2024-09-23	3.36	2.41	3.22	2.2	0.010	1.02	2.0	0.06	16.72	0.01	2.280	5.91	0.99	10.4	89.4	0.1	-4.81	0.69	0.63	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13552	1692	4	0	2	0	0	logfile
✔	9GV5	51624	2025-07-24	2024-09-22	4.0	4.59	4.06	4.6	0.002	0.52	0.0	0.04	11.20	0.00	2.306	5.31	0.35	6.9	93.1	0.0	0.71	0.63	0.60	—	4.6	0.003	0.60	0.0	0.04	14.40	0.00	2.264	9.15	0.70	8.6	91.4	0.0	0.44	0.89	0.62	0.61	—	5465	355	1	0	0	0	2766	logfile
✔	9JN0	61617	2025-07-30	2024-09-22	2.84	3.91	2.92	3.4	0.003	0.71	0.0	0.05	14.14	0.00	2.199	4.38	0.70	3.5	96.5	0.0	0.44	0.90	0.89	3.49	3.4	0.002	0.63	0.0	0.04	14.12	0.00	2.532	3.19	1.17	3.9	96.1	0.0	0.45	0.29	0.90	0.89	3.59	12001	1459	11	0	22	0	0	logfile
✔	9JMZ	61616	2025-07-30	2024-09-22	2.91	4.17	2.98	3.5	0.004	0.90	0.0	0.05	14.15	0.00	2.176	5.57	0.78	3.7	96.3	0.0	0.45	0.92	0.90	3.46	3.5	0.003	0.66	0.0	0.04	14.25	0.00	2.494	3.65	1.25	3.7	96.3	0.0	0.30	0.76	0.92	0.90	3.59	12001	1459	12	0	22	0	0	logfile
✔	9DPE	47104	2025-07-30	2024-09-21	3.86	4.57	3.79	3.9	0.002	0.45	0.0	0.04	7.39	0.00	2.119	3.63	0.15	1.8	98.2	0.0	1.23	0.86	0.79	2.16	3.9	0.003	0.56	0.0	0.04	11.04	0.00	2.386	5.65	1.51	3.8	96.2	0.0	0.02	0.83	0.87	0.81	2.46	11800	779	5	0	4	0	5786	logfile
✔	9DPC	47102	2025-07-31	2024-09-20	2.65	2.16	2.66	1.9	0.004	0.65	1.0	0.05	16.56	0.00	2.198	8.29	2.95	5.1	94.9	0.0	-1.16	0.82	0.83	3.47	1.9	0.005	0.67	0.0	0.05	16.64	0.00	2.495	7.21	3.23	5.8	94.2	0.0	-1.16	0.21	0.82	0.83	3.64	13370	1777	6	0	0	0	0	logfile
✔	9DP9	47099	2025-07-27	2024-09-20	4.1	5.32	4.14	4.1	0.002	0.47	0.0	0.03	24.28	0.00	1.014	17.50	0.00	0.0	0.0	0.0	—	0.92	0.83	—	4.1	0.006	0.76	0.0	0.04	25.84	0.01	1.820	39.73	0.00	0.0	0.0	0.0	—	3.41	0.93	0.89	—	9435	0	2	440	19	0	0	logfile

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