Table showing results for August 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9UoK	64380	2025-08-22	2025-04-25	3.05	3.48	3.02	3.4	0.003	0.73	0.0	0.04	15.03	0.00	2.496	4.90	0.60	5.0	95.0	0.0	-1.40	0.67	0.80	3.08	3.5	0.004	0.67	0.0	0.04	15.75	0.00	2.556	5.84	3.60	6.2	93.7	0.1	-1.40	0.38	0.68	0.82	2.63	5851	752	4	0	0	0	0	logfile
✔	9R04	53478	2025-08-24	2025-04-24	4.2	4.25	3.96	2.7	0.008	1.17	0.0	0.06	25.01	0.01	2.101	0.77	0.58	2.1	97.8	0.1	-0.06	0.78	0.75	—	2.7	0.004	0.66	0.0	0.04	24.77	0.00	2.259	9.21	0.00	1.0	99.0	0.0	2.24	2.03	0.78	0.77	—	15855	1552	14	284	0	0	0	logfile
✔	9oBP	70295	2025-08-22	2025-04-23	2.5	2.58	2.46	2.6	0.004	0.54	0.0	0.05	18.21	0.00	1.228	13.06	0.00	3.4	96.6	0.0	-1.82	0.47	0.80	3.61	2.6	0.003	0.56	0.0	0.05	19.02	0.00	2.431	5.56	3.65	3.8	96.2	0.0	-1.93	0.35	0.47	0.81	3.30	5310	750	15	0	25	0	0	logfile
✔	9oC4	70308	2025-08-23	2025-04-23	2.1	2.23	2.18	2.2	0.003	0.56	0.0	0.04	16.37	0.01	2.036	5.82	0.79	2.2	97.8	0.0	1.02	0.67	0.86	4.42	2.2	0.002	0.54	0.0	0.04	16.54	0.00	2.011	5.06	1.40	1.9	98.1	0.0	1.87	0.97	0.66	0.86	4.22	11068	1455	9	0	7	90	0	logfile
✔	9UMH	64274	2025-08-22	2025-04-22	3.1	3.54	1.92	3.5	0.008	1.17	0.0	0.07	11.43	0.00	2.301	1.08	0.00	10.1	89.5	0.4	-2.39	0.50	0.64	5.27	3.5	0.003	0.61	0.0	0.05	16.39	0.00	2.455	3.71	2.14	11.8	88.2	0.0	-1.58	1.92	0.54	0.77	5.32	8421	567	21	0	0	0	4263	logfile
✘	9oA8	70275	2025-08-23	2025-04-19	3.59	3.98	3.60	3.9	0.003	0.46	0.0	0.04	14.79	0.00	1.515	2.09	0.00	3.5	96.5	0.0	0.68	0.68	0.82	1.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15255	2024	13	0	15	0	0	logfile
✔	9o9T	70262	2025-08-22	2025-04-18	3.31	3.31	—	3.2	0.003	0.51	0.0	0.04	17.17	0.01	2.090	7.59	2.62	2.8	97.2	0.0	0.95	0.68	0.84	2.23	3.2	0.003	0.54	0.0	0.04	17.77	0.01	2.538	5.67	4.11	2.4	97.6	0.0	1.76	0.84	0.69	0.84	2.39	5222	674	2	0	0	0	0	logfile
✔	9o9S	70261	2025-08-22	2025-04-18	3.57	3.62	—	3.5	0.004	0.62	0.0	0.04	17.78	0.01	2.214	9.36	3.51	4.0	96.0	0.0	0.37	0.70	0.84	1.83	3.5	0.003	0.61	0.0	0.04	17.59	0.00	2.396	8.98	3.69	2.9	97.1	0.0	1.13	2.23	0.70	0.84	1.72	5322	684	3	0	1	0	0	logfile
✘	9o8U	70238	2025-08-23	2025-04-16	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13972	1746	11	0	6	0	0	logfile
✔	9o7S	70207	2025-08-23	2025-04-15	2.71	3.20	2.74	3.1	0.006	0.56	0.0	0.04	13.29	0.00	1.567	4.10	0.00	4.3	95.7	0.0	2.68	0.64	0.88	3.12	3.1	0.003	0.51	0.0	0.04	16.59	0.00	2.256	4.65	2.22	3.5	96.5	0.0	3.30	0.84	0.64	0.88	2.54	15539	2024	18	0	15	4	0	logfile
✔	9UiE	64191	2025-08-23	2025-04-15	2.88	2.44	2.79	2.7	0.004	0.60	0.0	0.04	18.98	0.00	2.477	5.72	1.70	3.2	96.6	0.2	1.07	0.67	0.85	3.53	2.7	0.004	0.59	0.0	0.04	18.94	0.00	2.502	5.86	2.89	3.9	95.9	0.3	0.94	0.31	0.67	0.85	3.41	14849	1772	5	31	2	0	0	logfile
✔	9UHT	64175	2025-08-24	2025-04-14	2.89	3.34	2.93	3.0	0.005	0.98	7.0	0.06	18.70	0.01	1.587	13.96	5.21	8.5	91.2	0.4	-1.94	0.78	0.75	2.00	3.0	0.005	0.76	0.0	0.04	18.26	0.00	2.033	10.13	2.19	8.4	91.5	0.2	-1.40	0.71	0.83	0.86	2.52	22068	2671	14	56	9	1	0	logfile
✔	9UGC	64136	2025-08-22	2025-04-11	3.52	3.75	3.56	3.7	0.003	0.63	0.0	0.04	16.67	0.00	2.197	12.78	0.43	3.7	96.3	0.0	1.13	0.70	0.77	1.11	3.7	0.004	0.69	0.0	0.04	17.49	0.00	2.531	12.18	4.40	4.0	96.0	0.0	1.09	0.37	0.70	0.78	1.03	6606	860	2	0	0	0	0	logfile
✔	9UGB	64135	2025-08-23	2025-04-11	3.25	3.47	3.27	3.5	0.004	0.72	2.0	0.05	15.66	0.00	2.242	11.90	0.29	3.2	96.8	0.0	0.79	0.62	0.75	1.60	3.5	0.004	0.56	1.0	0.04	16.75	0.00	2.200	7.65	2.04	3.8	96.2	0.0	1.37	1.33	0.61	0.77	2.04	12942	840	2	0	0	0	6509	logfile
✔	9o62	70157	2025-08-24	2025-04-10	2.03	2.16	—	2.1	0.004	0.70	0.0	0.04	15.06	0.01	1.774	13.39	0.99	2.4	97.2	0.3	1.48	0.67	0.83	5.50	2.1	0.006	0.76	0.0	0.04	15.70	0.01	2.138	11.99	1.83	2.1	97.4	0.5	1.25	0.33	0.68	0.85	5.53	19376	2425	26	0	30	0	0	logfile
✔	9o61	70156	2025-08-24	2025-04-10	1.68	2.14	1.71	1.9	0.004	0.70	0.0	0.04	14.95	0.01	1.774	11.88	0.94	1.3	98.4	0.3	2.20	0.83	0.91	6.35	2.0	0.005	0.71	0.0	0.04	15.01	0.00	2.080	10.65	0.94	0.7	98.7	0.6	2.16	0.44	0.84	0.93	6.37	16392	2040	24	0	30	0	0	logfile
✔	9o60	70155	2025-08-22	2025-04-10	2.63	3.15	2.75	3.0	0.005	0.67	0.0	0.05	17.46	0.00	2.197	18.68	0.75	8.2	91.5	0.2	-2.00	0.53	0.70	2.98	3.0	0.004	0.77	0.0	0.05	17.41	0.01	2.516	10.93	2.76	7.1	92.9	0.0	-1.54	0.67	0.49	0.69	2.51	3627	449	3	0	0	0	0	logfile
✔	9o5U	70148	2025-08-23	2025-04-10	2.75	2.99	2.82	3.0	0.007	1.23	0.0	0.07	11.69	0.01	2.211	3.36	0.00	1.8	98.2	0.0	-0.15	0.70	0.86	5.41	3.0	0.003	0.66	0.0	0.05	14.41	0.00	2.626	6.10	1.57	3.1	96.9	0.0	-1.17	0.40	0.71	0.87	4.26	11612	1544	8	0	4	0	0	logfile
✔	9o5W	70149	2025-08-23	2025-04-10	2.67	2.92	2.74	2.9	0.007	1.21	0.0	0.06	13.57	0.01	2.048	1.45	0.00	3.1	96.9	0.0	0.41	0.75	0.82	4.46	2.9	0.005	0.70	0.0	0.05	15.46	0.01	2.329	7.44	1.53	3.7	96.3	0.0	0.33	1.15	0.81	0.87	4.76	11421	1482	12	0	12	0	0	logfile
✔	9o54	70123	2025-08-22	2025-04-09	3.5	3.76	3.56	3.7	0.003	0.65	0.0	0.04	17.32	0.01	2.131	12.93	0.28	4.5	95.5	0.0	-1.25	0.71	0.80	2.18	3.7	0.003	0.64	0.0	0.04	17.59	0.00	2.520	10.25	4.02	5.3	94.7	0.0	-1.11	0.34	0.70	0.79	2.00	6433	827	4	0	1	0	0	logfile

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