Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9CEY	45523	2024-11-17	2024-06-27	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13829	607	6	121	3	3	6298	logfile
✘	9CER	45516	2024-11-17	2024-06-27	4.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14598	612	2	142	0	0	6561	logfile
✘	9CET	45518	2024-11-17	2024-06-27	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14090	596	5	134	1	0	6375	logfile
✔	9iKC	60655	2024-11-17	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.006	0.74	0.0	0.05	15.95	0.01	2.523	2.99	1.00	2.8	97.2	0.0	-0.22	1.14	0.75	0.89	6.57	12555	1587	6	0	0	150	0	logfile
✘	9CEW	45521	2024-11-17	2024-06-27	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15163	600	7	166	3	0	6758	logfile
✘	9CEV	45520	2024-11-17	2024-06-27	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14047	600	6	131	3	3	6353	logfile
✔	9CF3	45528	2024-11-18	2024-06-27	3.2	3.49	3.29	3.5	0.002	0.72	0.0	0.05	18.41	0.00	1.968	5.72	0.00	2.2	97.8	0.0	2.31	0.66	0.61	3.23	3.5	0.004	0.59	0.0	0.04	20.49	0.00	2.210	5.21	1.52	3.4	96.6	0.0	1.28	2.77	0.74	0.80	3.10	17651	888	5	98	0	0	8383	logfile
✘	9CEZ	45524	2024-11-17	2024-06-27	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13540	600	6	115	3	3	6178	logfile
✔	9CF0	45525	2024-11-18	2024-06-27	3.47	3.80	3.65	3.7	0.013	1.83	2.0	0.10	20.15	0.02	1.887	0.70	0.00	4.3	95.2	0.5	-1.20	0.71	0.62	2.71	3.7	0.003	0.63	0.0	0.04	20.47	0.00	2.339	5.33	0.76	4.5	95.4	0.1	0.65	0.99	0.77	0.80	2.31	17040	888	5	79	0	0	8166	logfile
✔	9FVD	50803	2024-11-16	2024-06-26	3.2	3.54	3.13	3.4	0.003	0.61	0.0	0.04	15.20	0.00	0.014	16.91	0.00	2.5	97.5	0.0	1.52	0.47	0.80	3.04	3.5	0.008	2.06	0.0	0.22	21.75	0.01	1.692	29.34	3.16	5.2	94.8	0.0	-0.15	2.32	0.43	0.70	1.34	10146	1143	8	54	0	0	0	logfile
✔	9FTJ	50747	2024-11-16	2024-06-24	4.0	4.14	3.87	4.0	0.007	0.64	0.0	0.05	15.42	0.00	2.304	5.97	0.00	5.1	94.9	0.0	-0.50	0.75	0.88	—	4.0	0.004	0.59	0.0	0.04	16.05	0.00	2.565	5.08	5.00	3.7	96.3	0.0	0.46	0.92	0.74	0.87	—	12045	1570	5	0	0	0	0	logfile
✘	9FTi	50746	2024-11-19	2024-06-24	3.5	3.01	3.49	3.0	0.005	0.60	0.0	0.04	16.70	0.00	2.028	5.56	0.27	5.7	94.3	0.0	-1.77	0.70	0.80	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19935	2780	5	0	0	0	0	logfile
✔	9FTG	50744	2024-11-20	2024-06-24	3.1	3.38	3.05	3.3	0.003	0.48	0.0	0.04	15.40	0.00	2.032	4.17	0.00	6.2	93.8	0.0	-0.54	0.71	0.90	3.62	3.3	0.002	0.54	0.0	0.04	15.83	0.00	2.374	3.24	2.88	5.9	94.1	0.0	0.29	0.34	0.67	0.89	3.28	21205	2795	10	0	5	0	0	logfile
✔	9iJE	60629	2024-11-15	2024-06-22	2.34	2.89	2.69	2.9	0.005	0.70	0.0	0.05	15.99	0.01	2.240	6.01	2.15	2.2	97.8	0.0	1.09	0.60	0.79	3.56	2.9	0.003	0.55	0.0	0.04	16.72	0.00	2.562	2.71	2.86	2.2	97.8	0.0	1.57	0.37	0.60	0.80	3.36	9340	1227	7	0	1	1	0	logfile
✔	9iJD	60628	2024-11-15	2024-06-22	2.76	3.23	2.98	3.2	0.006	0.78	1.0	0.05	16.98	0.01	2.181	14.24	1.73	3.1	96.8	0.2	0.20	0.55	0.73	2.81	3.2	0.002	0.58	0.0	0.04	17.63	0.00	2.473	6.31	3.05	2.8	97.2	0.0	0.82	1.15	0.56	0.74	2.12	9371	1227	7	0	1	0	0	logfile
✔	9CBZ	45429	2024-11-18	2024-06-20	2.86	2.52	2.85	2.9	0.005	0.64	0.0	0.05	13.20	0.00	1.462	6.02	0.00	2.8	97.2	0.0	1.11	0.53	0.60	0.52	2.8	0.003	0.55	0.0	0.04	15.73	0.00	2.498	6.70	1.06	2.5	97.5	0.0	1.67	1.46	0.70	0.90	3.57	15424	1892	8	0	8	0	0	logfile
✔	8ZYN	60573	2024-11-14	2024-06-18	3.27	3.51	3.26	3.5	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.55	0.0	0.04	15.72	0.00	2.627	5.49	3.03	2.5	97.5	0.0	1.36	0.33	0.58	0.83	1.42	6640	840	4	0	0	0	0	logfile
✔	8ZYo	60574	2024-11-14	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.004	0.58	0.0	0.04	16.49	0.00	2.540	6.82	4.18	3.1	96.9	0.0	1.94	0.31	0.58	0.85	1.94	6238	785	5	0	1	0	0	logfile
✔	8ZYQ	60576	2024-11-14	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.54	0.0	0.04	16.19	0.00	2.535	5.53	2.28	2.7	97.3	0.0	1.80	0.36	0.55	0.83	2.58	6329	796	5	0	1	0	0	logfile
✘	8ZYD	60562	2024-11-14	2024-06-17	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7058	728	6	73	2	0	0	logfile

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