Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8FLR	29284	2025-04-29	2022-12-22	2.94	3.07	2.85	3.2	0.003	0.59	0.0	0.04	13.80	0.00	2.201	7.84	0.11	3.0	97.0	0.0	1.23	0.65	0.73	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8928	1147	9	0	0	10	0	logfile
✘	8HTT	35017	2025-04-26	2022-12-21	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3292	389	5	0	8	0	0	logfile
✘	8C07	16356	2025-04-27	2022-12-16	3.3	2.75	3.20	2.2	0.004	0.94	0.0	0.05	16.63	0.01	2.288	4.36	0.38	8.1	91.9	0.0	-3.00	0.77	0.72	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4974	644	5	0	1	0	0	logfile
✘	8HRK	34976	2025-04-27	2022-12-15	3.3	3.56	3.36	3.6	0.005	0.71	0.0	0.04	16.73	0.01	2.273	5.11	0.14	3.2	96.8	0.0	-1.80	0.67	0.74	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6412	791	2	0	0	0	0	logfile
✘	8FFY	29070	2025-04-28	2022-12-11	3.6	3.59	3.60	3.8	0.008	0.72	0.0	0.05	19.05	0.00	2.125	4.09	0.00	0.3	99.7	0.0	-0.66	0.60	0.63	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7442	770	5	61	2	0	0	logfile
✘	8BVS	16270	2025-04-27	2022-12-05	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4799	617	4	1	1	0	0	logfile
✘	8Hio	34824	2025-04-28	2022-11-21	3.73	4.15	3.85	4.0	0.005	0.88	0.0	0.04	18.51	0.00	1.744	10.33	0.00	2.8	97.2	0.0	2.22	0.74	0.74	0.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6681	719	5	47	2	0	0	logfile
✘	8HGP	34745	2025-04-30	2022-11-15	4.53	2.79	4.46	2.3	0.003	0.70	0.0	0.05	10.20	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9169	1172	6	0	8	0	0	logfile
✘	8BMP	16120	2025-04-28	2022-11-10	3.2	3.48	3.25	3.5	0.003	0.64	0.0	0.04	14.23	0.00	2.246	6.03	0.00	2.5	97.5	0.0	0.66	0.69	0.84	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7794	989	6	0	3	0	0	logfile
✘	8HFC	34717	2025-04-27	2022-11-10	3.5	3.66	3.40	3.6	0.008	0.78	0.0	0.05	18.01	0.00	2.164	9.17	3.88	6.5	93.3	0.2	-2.90	0.68	0.82	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4007	498	3	0	3	0	0	logfile
✘	8HBF	34627	2025-04-29	2022-10-28	3.1	3.32	—	3.3	0.011	0.84	1.0	0.05	15.94	0.01	1.951	9.76	0.46	3.2	96.6	0.2	-0.23	0.73	0.82	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8448	1095	4	0	6	0	0	logfile
✘	8H86	34530	2025-04-28	2022-10-21	2.56	2.71	2.57	2.7	0.015	1.56	0.0	0.08	18.47	0.03	2.296	6.79	0.45	4.0	96.0	0.0	-0.67	0.46	0.73	5.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7080	765	6	0	48	63	0	logfile
✘	8H7Z	34526	2025-04-27	2022-10-21	3.07	3.23	3.01	3.2	0.003	0.63	0.0	0.04	12.59	0.00	2.210	6.35	0.00	3.4	96.6	0.0	-0.04	0.60	0.72	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4885	631	3	0	0	0	0	logfile
✘	8BC1	15959	2025-04-29	2022-10-14	2.93	3.48	2.74	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8684	1054	4	0	6	0	0	logfile
✘	8H4L	34480	2025-04-29	2022-10-10	3.07	2.31	3.09	3.0	0.007	0.90	0.0	0.05	12.79	0.01	2.069	4.07	0.23	4.4	95.6	0.0	-0.34	0.77	0.81	3.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8171	1059	6	0	1	0	0	logfile
✘	8EMR	28262	2025-04-28	2022-09-28	2.92	3.25	2.98	3.2	0.003	0.63	0.0	0.05	14.91	0.00	2.263	5.06	0.12	4.4	95.6	0.0	-0.58	0.74	0.79	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7685	952	4	0	6	0	0	logfile
✘	8GSZ	34244	2025-04-27	2022-09-07	3.65	3.14	3.67	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4870	620	2	0	0	0	0	logfile
✘	8GT6	34245	2025-04-27	2022-09-07	3.47	3.69	3.51	3.6	0.011	1.13	0.0	0.06	16.02	0.01	2.322	9.92	0.77	5.1	94.9	0.0	-4.60	0.63	0.82	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4922	618	3	0	1	0	0	logfile
✘	8AZT	15771	2025-04-27	2022-09-06	3.7	3.48	2.89	4.2	0.011	1.93	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	8GSE	34233	2025-04-28	2022-09-06	3.7	3.78	3.73	3.8	0.005	0.68	0.0	0.05	13.93	0.01	2.246	5.81	0.00	5.9	94.1	0.0	-1.94	0.43	0.85	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7474	952	5	0	0	0	0	logfile

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