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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8DVi | 27739 | 2024-07-23 | 2022-07-29 | 3.2 | 2.70 | 3.23 | 3.1 | 0.004 | 0.68 | 0.0 | 0.05 | 12.49 | 0.00 | 1.856 | 10.77 | 1.78 | 4.9 | 95.1 | 0.0 | 0.23 | 0.65 | 0.78 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23693 | 2914 | 14 | 17 | 10 | 0 | 0 | logfile |
✘ | 7YML | 33931 | 2024-07-23 | 2022-07-28 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18554 | 1848 | 50 | 0 | 89 | 7 | 0 | logfile |
✘ | 8DUL | 27722 | 2024-07-21 | 2022-07-27 | 4.17 | 4.34 | 4.24 | 4.7 | 0.005 | 1.04 | 0.0 | 0.07 | 13.09 | 0.02 | 2.317 | 6.11 | 0.06 | 5.3 | 94.7 | 0.0 | -2.03 | 0.56 | 0.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14203 | 1802 | 15 | 0 | 10 | 0 | 0 | logfile |
✘ | 8AHX | 15452 | 2024-07-21 | 2022-07-24 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12687 | 1608 | 13 | 0 | 24 | 0 | 0 | logfile |
✘ | 7YK6 | 33888 | 2024-07-19 | 2022-07-21 | 3.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8736 | 1118 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7YJN | 33875 | 2024-07-19 | 2022-07-20 | 3.4 | 3.63 | 3.43 | 3.6 | 0.019 | 1.74 | 21.0 | 0.13 | 15.89 | 0.01 | 1.776 | 26.04 | 8.37 | 11.1 | 87.0 | 1.9 | -2.39 | 0.70 | 0.83 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8528 | 1095 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8AG4 | 15415 | 2024-07-20 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YiX | 33865 | 2024-07-20 | 2022-07-18 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11080 | 1416 | 10 | 0 | 20 | 0 | 0 | logfile |
✘ | 8DQ1 | 27646 | 2024-07-23 | 2022-07-18 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17754 | 1075 | 8 | 36 | 2 | 0 | 8343 | logfile |
✘ | 8DQ0 | 27645 | 2024-07-23 | 2022-07-18 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17129 | 1075 | 6 | 0 | 2 | 0 | 8445 | logfile |
✘ | 8DPH | 27635 | 2024-07-19 | 2022-07-15 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8182 | 1093 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8DPF | 27633 | 2024-07-19 | 2022-07-15 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8160 | 1093 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8DPi | 27636 | 2024-07-19 | 2022-07-15 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8150 | 1093 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7YHP | 33835 | 2024-07-18 | 2022-07-14 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3815 | 374 | 4 | 38 | 1 | 0 | 0 | logfile |
✘ | 7YHo | 33832 | 2024-07-18 | 2022-07-14 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3923 | 361 | 4 | 49 | 1 | 0 | 0 | logfile |
✘ | 8DNY | 27584 | 2024-07-18 | 2022-07-12 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4428 | 558 | 8 | 0 | 1 | 0 | 97 | logfile |
✘ | 8DNX | 27583 | 2024-07-18 | 2022-07-12 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4342 | 549 | 8 | 0 | 1 | 0 | 71 | logfile |
✘ | 8Do3 | 27589 | 2024-07-18 | 2022-07-12 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4185 | 534 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 8AE1 | 15378 | 2024-07-23 | 2022-07-12 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2859 | 6 | 0 | 18 | 0 | 0 | logfile |
✘ | 8Do2 | 27588 | 2024-07-18 | 2022-07-12 | 2.95 | 3.24 | 2.95 | 3.2 | 0.005 | 0.73 | 0.0 | 0.04 | 12.56 | 0.00 | 2.254 | 7.21 | 0.22 | 1.7 | 98.3 | 0.0 | 2.17 | 0.58 | 0.80 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4226 | 541 | 4 | 0 | 1 | 0 | 0 | logfile |