Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8FHK	29087	2024-08-07	2022-12-14	2.9	2.20	—	1.7	0.008	1.17	1.0	0.06	18.88	0.02	2.200	7.55	0.39	7.0	93.0	0.0	-1.60	0.73	0.68	1.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19947	1219	4	0	20	0	9827	logfile
✘	8HQS	34953	2024-08-08	2022-12-14	3.2	3.55	3.31	3.4	0.003	0.57	0.0	0.04	11.43	0.00	2.203	11.20	0.60	5.2	94.8	0.0	0.73	0.63	0.59	1.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19224	2387	7	0	0	0	0	logfile
✘	8HQ7	34946	2024-08-04	2022-12-13	2.7	2.88	2.96	2.8	0.003	0.72	0.0	0.05	12.54	0.01	2.131	5.95	0.00	4.8	95.2	0.0	0.23	0.77	0.85	4.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8292	1082	6	0	2	0	0	logfile
✘	8BYS	16332	2024-08-03	2022-12-13	3.28	3.60	3.29	3.7	0.004	0.56	0.0	0.04	13.51	0.00	2.195	6.52	0.00	6.0	94.0	0.0	-0.91	0.70	0.83	3.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7406	968	3	0	0	0	0	logfile
✘	8FGX	29077	2024-08-04	2022-12-13	2.62	3.60	2.58	3.0	0.003	0.45	0.0	0.04	9.99	0.00	2.400	1.82	0.00	1.6	98.4	0.0	1.41	0.90	0.88	4.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9899	645	4	0	3	0	4873	logfile
✘	8HN8	34908	2024-08-03	2022-12-07	3.0	3.50	3.16	3.5	0.003	0.59	0.0	0.04	13.37	0.00	2.225	4.83	0.41	3.1	96.9	0.0	0.55	0.57	0.78	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8860	1120	6	0	1	0	0	logfile
✘	8HMZ	34905	2024-08-04	2022-12-06	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11542	1367	9	82	6	0	0	logfile
✘	8BVS	16270	2024-08-02	2022-12-05	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4799	617	4	1	1	0	0	logfile
✘	8BVQ	16268	2024-08-09	2022-12-05	3.3	3.33	3.29	3.5	0.004	0.55	0.0	0.04	16.05	0.00	2.088	7.55	0.31	4.1	95.9	0.0	-0.42	0.54	0.73	1.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23133	1518	6	0	0	0	11258	logfile
✘	8FDT	29012	2024-08-09	2022-12-04	3.2	3.48	3.37	3.5	0.005	0.80	0.0	0.05	13.94	0.00	1.592	11.78	0.27	4.0	95.9	0.1	0.21	0.70	0.76	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27096	3368	4	0	5	0	0	logfile
✘	8HMF	34898	2024-08-09	2022-12-03	4.6	5.14	4.45	4.5	0.002	0.60	0.0	0.04	14.45	0.00	2.183	11.55	0.04	4.0	95.8	0.2	0.23	0.90	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25330	3135	4	0	2	0	0	logfile
✘	8FCJ	28980	2024-08-09	2022-12-01	2.83	3.46	2.93	3.2	0.003	0.56	0.0	0.04	19.33	0.00	2.120	9.78	2.91	5.5	94.2	0.3	0.58	0.82	0.86	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26820	2979	15	113	0	0	0	logfile
✘	8HLB	34871	2024-08-03	2022-11-29	3.63	3.93	3.68	4.0	0.003	0.65	1.0	0.04	13.64	0.01	2.204	10.49	0.00	8.4	91.2	0.4	-2.13	0.70	0.75	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7461	977	5	0	0	0	0	logfile
✘	8HKM	34855	2024-08-10	2022-11-27	2.95	2.42	3.07	1.9	0.003	0.71	3.0	0.05	16.01	0.01	1.484	10.49	1.30	2.6	97.3	0.1	-0.56	0.80	0.84	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28855	3596	8	0	19	0	0	logfile
✘	8HKC	34849	2024-08-09	2022-11-25	2.49	2.34	2.50	2.3	0.002	0.45	0.0	0.04	17.03	0.00	2.123	4.80	0.00	1.5	98.5	0.0	0.81	0.77	0.86	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25779	3067	8	83	3	0	0	logfile
✘	8HJU	34838	2024-08-09	2022-11-23	2.8	2.56	2.77	2.8	0.020	2.08	1.0	0.40	20.78	0.03	1.827	25.04	0.66	3.6	96.3	0.0	-0.29	0.65	0.84	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23917	2330	71	0	97	0	0	logfile
✘	8HiM	34821	2024-08-08	2022-11-21	2.8	2.61	2.87	2.6	0.008	0.99	1.0	0.06	17.53	0.01	2.173	6.40	0.60	5.7	94.2	0.1	-3.49	0.73	0.83	3.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23948	2849	18	63	7	0	0	logfile
✘	8HiR	34827	2024-08-10	2022-11-21	3.18	3.42	3.31	3.4	0.003	0.77	8.0	0.05	15.77	0.00	2.000	11.70	0.09	2.8	97.2	0.0	-1.87	0.62	0.80	2.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29168	3672	8	0	16	0	0	logfile
✘	8HiJ	34818	2024-08-03	2022-11-20	3.54	2.56	3.51	3.0	0.005	0.76	1.0	0.05	9.66	0.01	2.315	3.83	0.00	5.2	94.8	0.0	-3.81	0.69	0.69	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8245	1055	5	0	1	0	0	logfile
✘	8HHX	34806	2024-08-09	2022-11-17	3.62	3.70	3.71	3.6	0.004	0.64	0.0	0.05	13.43	0.01	2.114	12.98	0.17	5.7	94.1	0.1	-1.21	0.47	0.60	0.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27435	3477	17	0	35	0	0	logfile

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