Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8F6C	28879	2022-12-18	2022-11-16	3.46	4.16	3.57	3.9	0.013	1.69	0.0	0.07	13.84	0.00	1.241	4.99	0.90	2.5	97.5	0.0	0.10	0.74	0.75	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19344	2396	12	0	12	0	0	logfile
✘	8F68	28877	2022-12-18	2022-11-16	3.15	3.85	3.18	3.7	0.012	1.51	0.0	0.07	13.68	0.00	1.244	6.33	0.00	1.9	98.1	0.0	0.75	0.78	0.83	2.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9666	1198	6	0	6	0	0	logfile
✘	8EP0	28494	2022-12-18	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.96	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✘	8H0Y	34418	2022-12-18	2022-09-30	2.85	3.06	2.88	3.0	0.008	0.82	0.0	0.06	13.16	0.01	2.274	2.64	0.00	3.2	96.8	0.0	-1.19	0.81	0.86	3.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24999	3094	6	0	52	0	0	logfile
✘	8GWA	34307	2022-12-20	2022-09-16	2.9	3.13	3.01	7.0	0.017	1.77	0.0	0.16	16.93	0.02	1.107	14.98	0.00	5.7	94.2	0.2	-1.01	0.17	-0.02	0.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37660	4006	27	0	160	0	0	logfile
✘	8EiG	28155	2022-12-18	2022-09-15	3.6	2.88	3.69	3.4	0.006	1.04	0.0	0.04	12.67	0.00	1.883	2.08	1.91	2.5	97.4	0.1	-0.77	0.61	0.79	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9249	1141	1	0	6	0	0	logfile
✘	8EF6	28069	2022-12-18	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	7.72	0.01	2.267	4.07	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11686	1439	9	0	12	0	0	logfile
✘	8EFo	28086	2022-12-18	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	8.02	0.01	2.241	5.94	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11708	1441	9	0	12	0	0	logfile
✘	8AZT	15771	2022-12-18	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	8ED8	28032	2022-12-18	2022-09-03	3.2	3.50	3.31	3.5	0.015	0.97	0.0	0.08	12.14	0.00	1.181	4.65	2.56	4.4	95.6	0.0	0.34	0.73	0.80	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32229	3872	12	0	81	0	0	logfile
✘	8ED9	28033	2022-12-18	2022-09-03	3.4	3.68	3.47	3.6	0.015	0.99	0.0	0.08	12.33	0.00	1.182	5.36	2.91	5.9	94.1	0.0	0.04	0.74	0.80	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32229	3872	12	0	81	0	0	logfile
✘	8EAR	27983	2022-12-19	2022-08-29	3.5	3.77	3.66	3.7	0.003	0.64	0.0	0.04	13.92	0.00	1.382	11.75	0.18	4.1	95.6	0.3	0.42	0.68	0.69	1.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	78512	9556	8	0	56	0	0	logfile
✘	8E6W	27928	2022-12-18	2022-08-23	4.27	8.79	6.27	7.5	0.005	0.68	0.0	0.05	14.37	0.00	1.321	31.63	1.63	1.3	98.4	0.3	-0.83	0.64	0.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21145	2502	13	58	18	0	53	logfile
✘	8E70	27932	2022-12-18	2022-08-23	4.1	8.52	6.00	7.4	0.004	0.69	0.0	0.05	14.45	0.00	1.287	29.26	1.63	1.3	98.4	0.3	-0.83	0.64	0.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21097	2502	13	61	18	0	63	logfile
✘	8E2L	27842	2022-12-18	2022-08-15	3.51	4.31	3.74	4.0	0.004	0.73	1.0	0.05	15.29	0.00	2.028	6.27	0.42	7.8	92.1	0.1	-0.93	0.78	0.72	1.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17092	2366	12	12	10	0	0	logfile
✘	8AP7	15560	2022-12-19	2022-08-09	2.7	2.82	2.67	2.8	0.010	0.58	0.0	0.04	16.08	0.01	1.211	1.71	0.44	1.6	98.4	0.0	2.70	0.65	0.87	5.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71474	4076	58	0	44	24	33618	logfile
✘	7YQZ	34040	2022-12-18	2022-08-08	3.84	4.12	3.90	3.9	0.004	0.77	2.0	0.05	13.97	0.01	1.625	6.60	0.07	6.8	92.9	0.3	-2.84	0.80	0.80	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28266	3531	12	0	53	0	0	logfile
✘	7YQT	34034	2022-12-18	2022-08-08	3.45	3.70	3.51	3.6	0.003	0.62	0.0	0.05	13.59	0.00	2.100	8.30	0.07	9.1	90.8	0.1	-1.51	0.77	0.78	1.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26493	3291	15	0	63	0	0	logfile
✘	7YQW	34037	2022-12-18	2022-08-08	3.51	3.86	3.56	3.8	0.004	0.57	0.0	0.04	13.34	0.00	1.820	9.07	0.18	7.7	92.2	0.0	-1.45	0.79	0.84	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25422	3126	21	0	69	0	0	logfile
✘	8DZi	27799	2022-12-18	2022-08-07	3.5	5.31	3.67	2.7	0.003	0.66	0.0	0.05	18.88	0.01	2.107	18.40	0.38	3.2	96.6	0.2	0.05	0.88	0.87	1.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31470	3918	32	0	63	0	0	logfile

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