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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8F6C | 28879 | 2022-12-18 | 2022-11-16 | 3.46 | 4.16 | 3.57 | 3.9 | 0.013 | 1.69 | 0.0 | 0.07 | 13.84 | 0.00 | 1.241 | 4.99 | 0.90 | 2.5 | 97.5 | 0.0 | 0.10 | 0.74 | 0.75 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19344 | 2396 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 8F68 | 28877 | 2022-12-18 | 2022-11-16 | 3.15 | 3.85 | 3.18 | 3.7 | 0.012 | 1.51 | 0.0 | 0.07 | 13.68 | 0.00 | 1.244 | 6.33 | 0.00 | 1.9 | 98.1 | 0.0 | 0.75 | 0.78 | 0.83 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9666 | 1198 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2022-12-18 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.96 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H0Y | 34418 | 2022-12-18 | 2022-09-30 | 2.85 | 3.06 | 2.88 | 3.0 | 0.008 | 0.82 | 0.0 | 0.06 | 13.16 | 0.01 | 2.274 | 2.64 | 0.00 | 3.2 | 96.8 | 0.0 | -1.19 | 0.81 | 0.86 | 3.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24999 | 3094 | 6 | 0 | 52 | 0 | 0 | logfile |
✘ | 8GWA | 34307 | 2022-12-20 | 2022-09-16 | 2.9 | 3.13 | 3.01 | 7.0 | 0.017 | 1.77 | 0.0 | 0.16 | 16.93 | 0.02 | 1.107 | 14.98 | 0.00 | 5.7 | 94.2 | 0.2 | -1.01 | 0.17 | -0.02 | 0.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37660 | 4006 | 27 | 0 | 160 | 0 | 0 | logfile |
✘ | 8EiG | 28155 | 2022-12-18 | 2022-09-15 | 3.6 | 2.88 | 3.69 | 3.4 | 0.006 | 1.04 | 0.0 | 0.04 | 12.67 | 0.00 | 1.883 | 2.08 | 1.91 | 2.5 | 97.4 | 0.1 | -0.77 | 0.61 | 0.79 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9249 | 1141 | 1 | 0 | 6 | 0 | 0 | logfile |
✘ | 8EF6 | 28069 | 2022-12-18 | 2022-09-08 | 3.2 | 2.91 | 3.02 | 3.1 | 0.005 | 0.87 | 0.0 | 0.07 | 7.72 | 0.01 | 2.267 | 4.07 | 0.00 | 1.3 | 98.7 | 0.0 | 0.00 | 0.59 | 0.75 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11686 | 1439 | 9 | 0 | 12 | 0 | 0 | logfile |
✘ | 8EFo | 28086 | 2022-12-18 | 2022-09-08 | 2.8 | 2.69 | 2.95 | 3.0 | 0.004 | 0.85 | 0.0 | 0.06 | 8.02 | 0.01 | 2.241 | 5.94 | 0.00 | 1.5 | 98.5 | 0.0 | -0.93 | 0.59 | 0.76 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11708 | 1441 | 9 | 0 | 12 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2022-12-18 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ED8 | 28032 | 2022-12-18 | 2022-09-03 | 3.2 | 3.50 | 3.31 | 3.5 | 0.015 | 0.97 | 0.0 | 0.08 | 12.14 | 0.00 | 1.181 | 4.65 | 2.56 | 4.4 | 95.6 | 0.0 | 0.34 | 0.73 | 0.80 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 8ED9 | 28033 | 2022-12-18 | 2022-09-03 | 3.4 | 3.68 | 3.47 | 3.6 | 0.015 | 0.99 | 0.0 | 0.08 | 12.33 | 0.00 | 1.182 | 5.36 | 2.91 | 5.9 | 94.1 | 0.0 | 0.04 | 0.74 | 0.80 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 8EAR | 27983 | 2022-12-19 | 2022-08-29 | 3.5 | 3.77 | 3.66 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 1.382 | 11.75 | 0.18 | 4.1 | 95.6 | 0.3 | 0.42 | 0.68 | 0.69 | 1.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78512 | 9556 | 8 | 0 | 56 | 0 | 0 | logfile |
✘ | 8E6W | 27928 | 2022-12-18 | 2022-08-23 | 4.27 | 8.79 | 6.27 | 7.5 | 0.005 | 0.68 | 0.0 | 0.05 | 14.37 | 0.00 | 1.321 | 31.63 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.64 | 0.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21145 | 2502 | 13 | 58 | 18 | 0 | 53 | logfile |
✘ | 8E70 | 27932 | 2022-12-18 | 2022-08-23 | 4.1 | 8.52 | 6.00 | 7.4 | 0.004 | 0.69 | 0.0 | 0.05 | 14.45 | 0.00 | 1.287 | 29.26 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.64 | 0.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21097 | 2502 | 13 | 61 | 18 | 0 | 63 | logfile |
✘ | 8E2L | 27842 | 2022-12-18 | 2022-08-15 | 3.51 | 4.31 | 3.74 | 4.0 | 0.004 | 0.73 | 1.0 | 0.05 | 15.29 | 0.00 | 2.028 | 6.27 | 0.42 | 7.8 | 92.1 | 0.1 | -0.93 | 0.78 | 0.72 | 1.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17092 | 2366 | 12 | 12 | 10 | 0 | 0 | logfile |
✘ | 8AP7 | 15560 | 2022-12-19 | 2022-08-09 | 2.7 | 2.82 | 2.67 | 2.8 | 0.010 | 0.58 | 0.0 | 0.04 | 16.08 | 0.01 | 1.211 | 1.71 | 0.44 | 1.6 | 98.4 | 0.0 | 2.70 | 0.65 | 0.87 | 5.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71474 | 4076 | 58 | 0 | 44 | 24 | 33618 | logfile |
✘ | 7YQZ | 34040 | 2022-12-18 | 2022-08-08 | 3.84 | 4.12 | 3.90 | 3.9 | 0.004 | 0.77 | 2.0 | 0.05 | 13.97 | 0.01 | 1.625 | 6.60 | 0.07 | 6.8 | 92.9 | 0.3 | -2.84 | 0.80 | 0.80 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28266 | 3531 | 12 | 0 | 53 | 0 | 0 | logfile |
✘ | 7YQT | 34034 | 2022-12-18 | 2022-08-08 | 3.45 | 3.70 | 3.51 | 3.6 | 0.003 | 0.62 | 0.0 | 0.05 | 13.59 | 0.00 | 2.100 | 8.30 | 0.07 | 9.1 | 90.8 | 0.1 | -1.51 | 0.77 | 0.78 | 1.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26493 | 3291 | 15 | 0 | 63 | 0 | 0 | logfile |
✘ | 7YQW | 34037 | 2022-12-18 | 2022-08-08 | 3.51 | 3.86 | 3.56 | 3.8 | 0.004 | 0.57 | 0.0 | 0.04 | 13.34 | 0.00 | 1.820 | 9.07 | 0.18 | 7.7 | 92.2 | 0.0 | -1.45 | 0.79 | 0.84 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25422 | 3126 | 21 | 0 | 69 | 0 | 0 | logfile |
✘ | 8DZi | 27799 | 2022-12-18 | 2022-08-07 | 3.5 | 5.31 | 3.67 | 2.7 | 0.003 | 0.66 | 0.0 | 0.05 | 18.88 | 0.01 | 2.107 | 18.40 | 0.38 | 3.2 | 96.6 | 0.2 | 0.05 | 0.88 | 0.87 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31470 | 3918 | 32 | 0 | 63 | 0 | 0 | logfile |