Table showing results for January 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QSK	18634	2024-01-18	2023-10-10	3.3	3.77	3.34	3.6	0.003	0.63	0.0	0.04	12.96	0.01	2.235	7.41	1.59	6.9	92.9	0.2	1.79	0.77	0.75	0.74	3.6	0.003	0.62	0.0	0.04	14.51	0.00	2.185	7.87	3.41	7.2	92.8	0.0	2.18	0.86	0.79	0.79	1.62	8506	1046	4	0	16	0	0	logfile
✔	8QSM	18636	2024-01-17	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.87	0.0	0.04	15.54	0.00	2.035	14.93	3.49	3.5	96.5	0.0	1.79	1.46	0.56	0.78	1.37	3579	464	1	0	0	0	0	logfile
✔	8WPG	37716	2024-01-19	2023-10-10	2.7	2.92	—	3.0	0.004	0.60	0.0	0.04	16.88	0.00	2.163	9.08	0.08	4.2	95.8	0.0	-0.13	0.64	0.80	3.33	2.9	0.004	0.58	0.0	0.04	16.82	0.00	2.156	8.41	3.82	4.6	95.4	0.0	-0.08	0.27	0.65	0.81	3.25	12443	1608	10	0	21	0	0	logfile
✔	8UHF	42279	2024-01-19	2023-10-09	3.8	3.77	—	1.7	0.002	0.49	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.6	0.003	0.78	0.0	0.04	15.72	0.00	2.146	18.48	2.99	3.7	96.3	0.0	0.18	0.89	0.63	0.80	0.04	12411	1739	9	0	0	0	0	logfile
✔	8WoZ	37703	2024-01-17	2023-10-08	3.25	2.47	3.32	2.2	0.003	0.70	1.0	0.04	16.32	0.01	2.147	10.00	0.15	5.8	94.2	0.0	-0.58	0.75	0.72	1.58	2.1	0.003	0.67	0.0	0.04	17.08	0.01	2.147	8.53	2.23	6.3	93.7	0.0	-0.20	0.43	0.76	0.75	1.18	6244	768	3	0	1	0	0	logfile
✔	8WoX	37701	2024-01-17	2023-10-08	2.75	2.45	3.23	2.2	0.003	0.53	0.0	0.04	13.94	0.00	2.099	4.19	0.00	4.3	95.7	0.0	0.02	0.77	0.83	3.39	2.3	0.005	0.65	0.0	0.04	16.20	0.00	2.108	7.98	3.08	5.4	94.6	0.0	0.08	1.00	0.77	0.84	3.36	6348	782	4	0	2	0	0	logfile
✔	8UH4	42246	2024-01-18	2023-10-06	3.72	4.54	4.34	4.4	0.008	0.78	0.0	0.05	15.20	0.01	2.146	13.85	0.00	2.4	97.2	0.5	-2.44	0.80	0.84	3.98	4.4	0.005	0.92	1.0	0.04	17.87	0.00	1.719	16.02	3.97	4.2	95.8	0.0	-2.00	0.64	0.76	0.79	3.44	110100	12780	120	540	0	0	0	logfile
✔	8UFH	42207	2024-01-18	2023-10-04	3.2	3.52	3.27	3.5	0.009	0.91	0.0	0.15	16.70	0.02	1.977	9.69	0.00	2.4	97.6	0.0	1.00	0.61	0.84	2.89	3.5	0.004	0.67	0.0	0.07	17.44	0.00	2.086	9.85	2.10	1.9	98.1	0.0	0.61	0.88	0.53	0.83	2.40	9128	1120	5	0	2	0	0	logfile
✔	8UFG	42206	2024-01-18	2023-10-04	3.1	3.39	3.15	3.4	0.008	0.93	0.0	0.14	16.01	0.00	1.993	9.29	0.11	2.0	98.0	0.0	1.04	0.62	0.85	2.46	3.4	0.003	0.65	0.0	0.07	15.91	0.00	2.224	9.34	1.05	2.2	97.8	0.0	0.88	1.21	0.54	0.84	2.51	9107	1120	6	0	2	0	0	logfile
✔	8QoT	18541	2024-01-18	2023-09-29	3.2	2.66	3.11	2.2	0.004	0.62	0.0	0.04	12.78	0.00	2.219	6.66	0.00	3.7	96.3	0.0	0.08	0.79	0.77	3.11	3.0	0.003	0.65	0.0	0.04	15.09	0.00	2.217	8.88	2.30	3.8	96.2	0.0	0.91	1.15	0.79	0.81	2.98	7493	968	5	0	0	0	0	logfile
✔	8UCW	42142	2024-01-20	2023-09-27	3.64	4.65	3.41	2.7	0.008	0.57	0.0	0.04	20.68	0.00	2.087	3.44	0.00	3.0	97.0	0.0	1.69	0.87	0.75	0.97	2.5	0.003	0.56	0.0	0.04	20.34	0.00	1.347	7.69	1.68	2.6	97.4	0.0	1.35	1.28	0.89	0.80	0.93	15967	868	5	61	4	0	7703	logfile
✔	8UCD	42124	2024-01-18	2023-09-26	3.0	3.31	2.98	3.3	0.007	0.86	0.0	0.04	17.94	0.00	2.171	4.36	0.12	4.4	95.6	0.0	0.96	0.64	0.82	2.47	3.3	0.002	0.56	0.0	0.04	17.13	0.00	2.253	3.87	1.33	4.6	95.4	0.0	1.29	0.91	0.59	0.81	2.32	8058	939	8	0	9	1	0	logfile
✔	8UC1	42112	2024-01-19	2023-09-25	3.4	3.74	3.42	3.8	0.005	0.72	0.0	0.05	14.10	0.01	2.220	15.14	0.71	4.2	95.8	0.0	1.30	0.66	0.76	2.67	3.8	0.003	0.54	0.0	0.04	14.92	0.00	2.229	9.93	2.47	3.5	96.3	0.2	1.98	1.14	0.58	0.78	1.96	10310	1336	4	0	2	0	0	logfile
✔	8QN7	18509	2024-01-17	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.7	0.003	0.50	0.0	0.05	18.63	0.00	2.616	2.48	0.00	6.7	93.3	0.0	-3.34	1.19	0.43	0.92	6.04	1455	190	5	0	0	0	0	logfile
✔	8UAE	42061	2024-01-19	2023-09-20	3.25	2.38	3.36	2.1	0.004	0.54	0.0	0.13	15.78	0.00	1.383	2.81	0.01	4.4	95.6	0.0	-0.64	0.80	0.81	2.82	2.1	0.002	0.52	0.0	0.04	17.07	0.00	2.033	4.08	1.39	4.3	95.7	0.0	-0.33	1.21	0.79	0.80	2.49	64624	8033	35	0	22	0	0	logfile
✔	8UAF	42062	2024-01-19	2023-09-20	3.18	2.39	3.33	2.1	0.005	0.64	0.0	0.27	18.11	0.00	1.721	4.71	0.00	5.0	95.0	0.0	-0.70	0.75	0.74	2.16	2.1	0.003	0.67	3.0	0.04	16.88	0.00	1.711	6.85	1.96	5.6	94.4	0.0	-1.07	0.43	0.75	0.74	1.78	64015	8033	35	0	22	0	0	logfile
✔	8QKK	18464	2024-01-17	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.005	1.15	1.0	0.05	15.88	0.00	2.253	10.33	1.85	2.3	97.7	0.0	1.66	0.79	0.64	0.80	1.36	5581	730	1	0	0	0	0	logfile
✔	8QJX	18453	2024-01-18	2023-09-14	3.3	3.68	3.02	3.3	0.005	0.59	0.0	0.05	13.62	0.00	1.871	5.41	0.00	3.7	96.3	0.0	-0.83	0.88	0.87	4.13	3.3	0.003	0.62	0.0	0.04	15.00	0.00	2.066	8.57	2.47	3.8	96.2	0.0	-0.40	0.79	0.88	0.88	3.40	7868	997	5	0	0	0	0	logfile
✔	8QJY	18454	2024-01-17	2023-09-14	3.5	4.18	3.43	3.7	0.003	0.61	0.0	0.05	13.67	0.00	1.682	8.80	0.14	2.7	97.3	0.0	-0.59	0.85	0.80	3.37	3.9	0.004	0.73	0.0	0.04	15.63	0.00	2.092	15.25	3.66	3.4	96.6	0.0	-0.51	1.62	0.86	0.84	2.78	6287	798	4	0	0	0	0	logfile
✔	8QK3	18455	2024-01-18	2023-09-14	3.2	4.00	3.10	3.4	0.003	0.60	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.006	0.76	0.0	0.04	14.56	0.00	2.049	17.02	3.18	4.9	95.1	0.0	-0.45	0.93	0.87	0.87	3.00	7535	955	5	0	0	0	0	logfile

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