Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JR2	61746	2025-01-16	2024-09-29	2.8	2.91	—	3.0	0.003	0.51	0.0	0.04	14.04	0.00	2.142	3.21	0.31	2.8	97.2	0.0	0.54	0.26	0.61	3.01	2.9	0.006	0.67	0.0	0.04	15.81	0.00	2.505	8.05	3.43	4.3	95.7	0.0	0.77	0.64	0.50	0.77	2.62	9418	1225	8	0	1	1	0	logfile
✔	9JR3	61747	2025-01-16	2024-09-29	2.8	2.91	—	2.9	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.69	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	2.9	0.003	0.61	0.0	0.04	15.64	0.00	2.514	7.37	3.64	2.8	97.1	0.1	0.91	0.90	0.49	0.76	2.30	9455	1228	9	0	3	1	0	logfile
✔	9JQT	61741	2025-01-14	2024-09-28	2.7	3.06	2.80	3.1	0.005	0.72	0.0	0.05	13.51	0.01	2.209	8.55	0.31	2.0	98.0	0.0	0.51	0.41	0.62	3.55	3.0	0.004	0.57	0.0	0.04	15.04	0.00	2.610	7.11	3.15	2.1	97.9	0.0	0.70	0.31	0.55	0.79	3.34	5669	720	4	0	0	0	0	logfile
✔	9GVQ	51639	2025-01-22	2024-09-25	3.9	4.56	3.85	9.3	0.004	0.52	0.0	0.04	15.96	0.00	0.942	7.11	2.27	3.3	96.7	0.0	0.27	0.43	0.15	-0.11	3.4	0.003	0.76	0.0	0.05	16.14	0.00	2.058	13.81	1.43	4.7	95.3	0.0	-0.58	1.45	0.58	0.55	0.21	69500	9216	16	0	32	0	0	logfile
✔	9GVJ	51636	2025-01-22	2024-09-24	2.91	3.20	2.84	3.1	0.002	0.51	0.0	0.04	15.91	0.00	2.184	5.74	2.22	3.2	96.8	0.0	0.26	0.73	0.90	3.60	3.1	0.005	0.59	0.0	0.05	15.90	0.00	2.072	3.93	1.70	3.9	96.1	0.0	0.27	0.20	0.73	0.90	3.57	17636	2304	12	0	14	177	0	logfile
✔	9DMZ	47021	2025-01-14	2024-09-16	2.8	2.58	2.73	2.5	0.003	0.60	0.0	0.06	13.01	0.00	2.275	10.79	0.00	1.5	98.5	0.0	-3.51	0.43	0.77	3.82	2.5	0.004	0.73	0.0	0.06	17.65	0.00	2.602	14.51	2.05	6.3	93.7	0.0	-4.18	1.36	0.46	0.80	3.37	5690	690	10	0	10	0	0	logfile
✔	9JKQ	61567	2025-01-15	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.002	0.52	0.0	0.04	15.84	0.00	2.561	4.74	2.08	2.6	97.4	0.0	1.24	1.24	0.66	0.84	2.85	8386	1055	6	0	1	0	0	logfile
✔	9DMY	47020	2025-01-14	2024-09-16	2.8	2.57	2.74	2.5	0.002	0.48	0.0	0.05	13.08	0.00	2.331	10.31	0.00	1.5	98.5	0.0	-3.48	0.44	0.78	3.76	2.5	0.004	0.72	0.0	0.05	18.11	0.00	2.634	14.68	3.08	6.5	93.5	0.0	-4.18	1.35	0.45	0.80	3.27	5550	690	5	0	0	0	0	logfile
✔	9JKB	61550	2025-01-16	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.004	0.71	0.0	0.04	17.54	0.00	2.523	13.61	2.56	4.2	95.8	0.0	0.45	1.03	0.78	0.80	1.08	9532	1179	5	0	0	0	0	logfile
✔	9JK6	61545	2025-01-22	2024-09-15	3.0	3.22	3.01	3.2	0.005	0.87	0.0	0.05	8.38	0.01	2.031	3.49	0.00	1.4	98.6	0.0	-2.44	0.67	0.78	3.24	3.2	0.004	0.78	0.0	0.04	14.98	0.00	2.365	7.10	3.12	3.1	96.9	0.0	1.71	1.38	0.70	0.83	2.29	18504	2256	6	0	0	0	0	logfile
✔	9JKA	61549	2025-01-22	2024-09-15	2.5	2.91	2.70	2.9	0.007	0.90	0.0	0.05	8.50	0.01	2.029	4.45	0.00	1.4	98.6	0.0	-2.23	0.63	0.80	3.84	2.9	0.003	0.57	0.0	0.04	15.74	0.00	2.611	7.22	1.79	1.2	98.8	0.0	2.41	0.68	0.65	0.83	2.75	17820	2172	6	0	0	0	0	logfile
✔	9JK9	61548	2025-01-22	2024-09-15	2.2	2.48	2.29	2.5	0.006	0.97	0.0	0.05	9.35	0.01	2.025	5.96	0.30	3.0	97.0	0.0	-2.48	0.64	0.78	4.58	2.5	0.003	0.59	0.0	0.04	15.25	0.00	2.539	9.11	2.06	3.0	97.0	0.0	2.04	1.24	0.66	0.82	3.02	18582	2268	6	0	0	0	0	logfile
✔	9JK8	61547	2025-01-22	2024-09-15	2.6	2.84	2.66	2.9	0.005	0.82	0.0	0.05	9.73	0.01	2.028	13.62	0.00	3.1	96.9	0.0	-1.32	0.64	0.80	3.74	2.9	0.003	0.61	0.0	0.04	14.87	0.00	2.356	9.05	2.06	3.3	96.7	0.0	1.62	1.62	0.67	0.83	3.47	18504	2256	6	0	0	0	0	logfile
✔	9JK7	61546	2025-01-22	2024-09-15	2.9	3.10	2.95	3.1	0.005	0.67	0.0	0.05	7.69	0.00	2.026	12.11	0.00	0.8	99.2	0.0	-0.76	0.65	0.79	3.59	3.1	0.004	0.60	0.0	0.04	14.78	0.00	2.601	9.48	1.58	2.2	97.8	0.0	2.01	0.54	0.67	0.82	2.76	17820	2172	6	0	0	0	0	logfile
✔	9JJi	61528	2025-01-16	2024-09-13	3.4	2.52	3.39	2.2	0.005	0.60	0.0	0.05	12.41	0.00	2.221	4.62	0.00	2.6	97.4	0.0	-0.45	0.60	0.80	3.64	2.1	0.004	0.65	0.0	0.05	14.91	0.01	2.493	4.06	2.95	2.6	97.4	0.0	-0.62	2.00	0.61	0.82	3.27	10021	1332	4	0	0	0	0	logfile
✔	9JJH	61527	2025-01-26	2024-09-13	2.4	2.34	2.48	2.4	0.002	0.55	0.0	0.05	14.02	0.00	1.138	3.39	0.00	1.2	98.8	0.0	-0.05	0.69	0.87	4.23	2.4	0.002	0.54	0.0	0.05	15.23	0.00	2.624	3.06	2.61	0.9	99.1	0.0	-0.36	0.47	0.70	0.88	4.66	77880	10080	60	0	0	0	0	logfile
✔	9GQo	51510	2025-01-14	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.004	0.86	0.0	0.04	18.13	0.00	1.907	20.42	3.87	7.2	92.8	0.0	-0.95	1.41	0.82	0.82	0.04	6716	880	2	0	3	0	0	logfile
✔	9GNQ	51477	2025-01-16	2024-09-03	2.9	3.52	2.88	3.3	0.006	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.66	0.0	0.05	16.09	0.00	1.974	4.31	1.79	2.3	97.7	0.0	1.29	2.01	0.72	0.89	3.42	9309	1166	7	1	4	0	0	logfile
✔	9DGG	46823	2025-01-18	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.004	0.69	0.0	0.04	27.35	0.00	2.393	9.91	2.18	3.0	97.0	0.0	2.56	0.55	0.90	0.89	2.08	13339	959	14	286	4	0	0	logfile
✔	9JE0	61403	2025-01-13	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.69	0.0	0.04	15.93	0.00	2.614	8.66	2.61	2.6	97.4	0.0	2.09	0.61	0.43	0.70	1.21	3321	435	2	0	1	1	0	logfile

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