Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XXL	38752	2025-01-24	2024-01-18	2.9	2.97	2.92	2.9	0.005	0.82	0.0	0.05	21.86	0.01	2.070	5.84	0.58	6.2	93.4	0.4	-2.86	0.85	0.84	3.18	2.9	0.003	0.62	0.0	0.04	22.19	0.00	1.967	8.00	2.81	6.4	93.5	0.1	-0.55	0.38	0.88	0.88	2.60	76240	4975	41	1723	25	0	0	logfile
✔	8VQ9	43435	2025-01-16	2024-01-18	2.7	2.88	2.71	2.9	0.010	1.20	0.0	0.08	9.90	0.00	2.511	0.94	0.00	2.9	97.1	0.0	0.54	0.66	0.75	4.36	2.9	0.003	0.57	0.0	0.04	14.10	0.00	2.603	3.36	0.95	1.7	98.3	0.0	1.91	1.11	0.73	0.83	3.55	9513	1278	15	0	27	0	0	logfile
✔	8VQA	43436	2025-01-16	2024-01-18	3.5	3.83	3.41	3.9	0.011	1.34	0.0	0.09	9.89	0.00	2.443	0.78	0.77	2.6	96.7	0.7	0.07	0.62	0.70	3.56	3.9	0.003	0.61	0.0	0.04	12.93	0.00	2.629	3.39	1.29	3.9	96.1	0.0	0.74	1.16	0.71	0.78	3.07	9495	1290	18	0	30	0	0	logfile
✔	8XXQ	38758	2025-01-20	2024-01-18	2.75	3.85	2.87	3.4	0.002	0.48	0.0	0.04	8.14	0.00	2.142	4.76	0.43	1.9	98.0	0.1	-0.18	0.89	0.82	2.98	3.4	0.003	0.68	0.0	0.04	12.84	0.00	2.594	8.00	1.22	2.9	97.1	0.0	1.29	1.02	0.88	0.86	2.92	15172	1996	4	0	0	0	0	logfile
✔	8RQL	19445	2025-01-15	2024-01-18	3.03	3.10	—	3.3	0.003	0.53	0.0	0.04	12.19	0.00	2.097	5.46	0.22	3.4	96.6	0.0	0.33	0.54	0.79	3.34	3.3	0.003	0.59	0.0	0.04	15.25	0.00	2.437	5.40	2.43	3.8	96.2	0.0	0.48	0.59	0.61	0.85	2.96	8646	1126	6	0	2	0	0	logfile
✔	8VQC	43438	2025-01-17	2024-01-18	3.9	4.20	3.94	4.1	0.004	0.76	0.0	0.05	19.50	0.00	1.791	14.47	0.72	7.5	92.4	0.1	-0.22	0.60	0.78	0.99	4.1	0.004	0.76	0.0	0.04	16.41	0.00	2.457	13.59	4.07	7.7	92.3	0.1	-0.09	0.40	0.60	0.80	1.06	10954	1352	8	0	17	0	0	logfile
✔	8XXM	38753	2025-01-25	2024-01-18	3.2	3.17	3.15	3.1	0.005	0.89	0.0	0.05	22.16	0.01	2.081	6.64	0.02	7.2	92.6	0.2	-2.18	0.85	0.83	2.41	3.1	0.003	0.65	0.0	0.04	22.31	0.00	1.982	9.22	2.30	7.2	92.6	0.1	-0.95	0.36	0.88	0.88	1.90	76934	5062	42	1723	26	0	0	logfile
✔	8RQ4	19433	2025-01-17	2024-01-17	3.45	3.84	3.57	3.8	0.007	0.72	0.0	0.05	18.58	0.00	2.209	11.02	0.64	4.5	95.5	0.0	1.28	0.61	0.78	1.01	3.8	0.004	0.62	0.0	0.04	18.46	0.00	2.514	8.15	3.79	4.0	96.0	0.0	1.77	0.51	0.66	0.85	1.01	11210	1402	2	0	3	0	0	logfile
✔	8RQ3	19431	2025-01-17	2024-01-17	3.21	3.47	3.25	3.5	0.009	0.81	0.0	0.05	14.58	0.00	2.149	9.58	0.00	6.2	93.8	0.0	-0.39	0.61	0.85	2.21	3.5	0.003	0.56	0.0	0.04	16.35	0.00	2.523	4.99	1.89	4.1	95.9	0.0	1.83	0.74	0.58	0.84	0.95	11375	1432	1	0	0	0	0	logfile
✔	8XWQ	38741	2025-01-16	2024-01-16	4.6	4.22	4.62	4.1	0.003	0.55	0.0	0.04	12.78	0.00	2.145	14.35	7.98	3.6	96.4	0.0	-0.12	0.72	0.74	—	4.1	0.003	0.75	0.0	0.04	12.48	0.00	2.351	15.34	0.10	4.1	95.9	0.0	-0.62	1.88	0.73	0.75	—	9076	1163	6	0	0	0	0	logfile
✔	8VPA	43405	2025-01-15	2024-01-16	3.11	3.39	3.19	3.4	0.003	0.52	0.0	0.04	14.44	0.00	2.224	4.91	0.00	2.8	97.2	0.0	2.35	0.61	0.84	2.93	3.4	0.002	0.51	0.0	0.04	15.76	0.00	2.477	4.74	1.68	2.9	97.1	0.0	2.57	0.69	0.62	0.84	2.63	8658	1098	4	0	2	0	0	logfile
✔	8VPQ	43413	2025-01-18	2024-01-16	3.3	3.57	3.33	3.6	0.004	0.79	0.0	0.04	9.42	0.00	2.036	10.44	0.00	13.8	83.2	3.0	-4.85	0.65	0.77	3.77	3.6	0.006	0.75	0.0	0.05	14.03	0.00	1.984	6.75	2.05	8.2	91.4	0.4	-1.55	0.54	0.74	0.86	3.13	12090	1509	6	0	2	0	0	logfile
✔	8VoV	43392	2025-01-19	2024-01-16	3.6	3.53	1.87	3.7	0.012	0.88	0.0	0.04	18.13	0.00	1.985	4.60	0.07	4.2	95.8	0.0	1.83	0.68	0.84	1.09	3.7	0.003	0.58	0.0	0.04	17.78	0.00	2.479	2.77	1.84	3.1	96.9	0.0	1.88	0.41	0.68	0.84	1.11	13998	1734	12	0	12	0	0	logfile
✔	8VPP	43412	2025-01-16	2024-01-16	2.9	3.20	2.97	3.2	0.004	0.65	0.0	0.14	19.24	0.01	1.832	47.41	4.30	4.9	94.8	0.3	0.42	0.54	0.81	2.12	3.2	0.003	0.78	0.0	0.07	18.94	0.00	2.166	8.66	3.35	3.9	95.8	0.2	0.80	1.36	0.57	0.84	2.38	9930	1264	3	0	1	2	0	logfile
✔	8VoW	43393	2025-01-16	2024-01-16	3.44	3.70	3.48	3.7	0.003	0.55	0.0	0.04	15.06	0.00	1.916	8.24	0.21	5.9	94.1	0.0	1.32	0.69	0.80	1.34	3.7	0.003	0.56	0.0	0.04	16.76	0.00	1.946	7.47	1.64	6.1	93.9	0.0	1.63	0.31	0.69	0.82	1.08	8917	1131	4	0	5	0	0	logfile
✔	8XWP	38740	2025-01-16	2024-01-16	3.21	3.22	3.19	3.4	0.002	0.47	0.0	0.04	12.28	0.00	2.144	8.97	5.56	3.9	96.1	0.0	-0.38	0.67	0.77	1.87	3.4	0.004	0.98	1.0	0.04	15.14	0.00	1.999	12.41	4.95	4.5	95.5	0.0	-0.30	1.29	0.66	0.76	1.38	9076	1163	6	0	0	0	0	logfile
✔	8VPB	43406	2025-01-17	2024-01-16	3.23	3.75	3.50	3.7	0.002	0.54	0.0	0.04	15.78	0.00	2.041	8.08	0.17	4.3	95.7	0.0	0.83	0.59	0.77	1.29	3.7	0.005	0.95	2.0	0.05	16.31	0.00	1.907	7.50	3.52	4.8	95.2	0.0	1.09	0.28	0.57	0.76	0.97	10928	1394	4	0	4	0	0	logfile
✔	8XW2	38728	2025-01-16	2024-01-15	3.59	3.94	3.75	3.9	0.005	0.76	0.0	0.05	13.68	0.01	2.169	11.00	0.00	5.2	94.8	0.0	0.69	0.65	0.81	2.45	3.9	0.003	0.70	0.0	0.04	16.00	0.00	2.502	7.86	1.42	4.5	95.5	0.0	1.17	0.49	0.66	0.81	1.90	10150	1268	2	0	0	0	0	logfile
✔	8XVX	38721	2025-01-17	2024-01-15	3.32	3.60	3.32	3.6	0.007	0.76	0.0	0.05	14.52	0.01	2.136	11.14	0.00	10.0	90.0	0.0	-0.50	0.66	0.81	2.26	3.5	0.003	0.61	0.0	0.04	16.48	0.01	2.555	5.70	2.32	7.9	92.1	0.0	0.63	0.36	0.64	0.80	1.29	11110	1392	2	0	0	0	0	logfile
✔	8XW1	38727	2025-01-14	2024-01-15	4.49	4.73	4.24	4.6	0.005	0.82	0.0	0.05	14.01	0.01	2.139	20.22	0.19	7.2	92.8	0.0	-0.07	0.59	0.82	—	4.6	0.003	0.69	0.0	0.04	14.24	0.00	2.335	12.07	0.00	5.3	94.7	0.0	1.05	1.06	0.58	0.81	—	5082	634	1	0	0	0	0	logfile

• ← previous
• Page 45 of 550
• next →