Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VSB	43492	2025-01-14	2024-01-23	2.93	3.23	2.99	3.2	0.009	0.95	0.0	0.05	12.83	0.01	2.198	5.48	0.00	7.7	92.3	0.0	-2.77	0.71	0.82	4.21	3.2	0.002	0.62	0.0	0.04	15.77	0.00	2.544	3.54	1.57	4.4	95.6	0.0	-1.49	0.79	0.65	0.81	3.32	7519	969	3	0	0	0	0	logfile
✔	8VSC	43493	2025-01-22	2024-01-23	3.0	3.24	3.00	3.2	0.004	0.73	0.0	0.04	14.82	0.01	2.169	4.09	0.42	2.9	97.1	0.0	-1.07	0.64	0.76	3.33	3.2	0.003	0.56	0.0	0.04	15.59	0.00	2.381	4.54	1.66	3.2	96.8	0.0	-1.05	0.93	0.65	0.78	2.66	17630	1139	3	0	0	0	8786	logfile
✔	8VS6	43489	2025-01-18	2024-01-23	2.73	2.90	2.73	2.9	0.004	0.74	0.0	0.05	16.49	0.00	1.899	1.66	1.65	3.2	96.8	0.0	-0.31	0.72	0.79	3.25	2.9	0.004	0.63	0.0	0.05	15.98	0.00	1.824	3.95	2.70	4.6	95.4	0.0	-0.92	0.37	0.71	0.79	3.13	12453	800	10	0	23	0	6015	logfile
✔	8Y0Y	38823	2025-01-15	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.005	0.74	0.0	0.05	15.33	0.01	2.432	3.46	4.07	7.6	92.4	0.0	-1.04	1.20	0.66	0.78	3.21	5027	652	4	0	1	0	0	logfile
✔	8VSE	43497	2025-01-15	2024-01-23	3.8	4.42	3.88	4.0	0.002	0.51	0.0	0.04	9.30	0.00	2.297	8.67	1.48	4.5	95.5	0.0	1.15	0.78	0.67	0.85	4.0	0.003	0.66	0.0	0.05	13.31	0.00	2.492	11.98	1.14	4.7	95.3	0.0	0.23	1.51	0.83	0.76	1.34	8043	963	13	0	20	0	0	logfile
✔	8Y16	38826	2025-01-15	2024-01-23	2.98	4.25	3.28	3.0	0.004	0.68	1.0	0.06	14.69	0.01	2.088	7.41	0.12	5.8	93.9	0.4	-0.19	0.71	0.47	1.89	3.0	0.003	0.68	0.0	0.04	14.65	0.00	2.043	6.75	0.52	5.3	94.6	0.1	-0.14	0.70	0.82	0.76	1.84	39510	4820	31	0	84	0	0	logfile
✔	8VRW	43488	2025-01-17	2024-01-22	3.03	2.28	3.04	2.1	0.004	0.60	0.0	0.05	10.40	0.02	2.030	18.92	0.52	4.3	95.7	0.0	-1.34	0.67	0.64	2.23	1.5	0.004	0.66	0.0	0.04	13.82	0.01	2.382	11.50	2.00	4.4	95.6	0.0	-0.81	1.14	0.67	0.66	2.41	10413	1272	9	0	0	0	0	logfile
✔	8XZA	38791	2025-01-14	2024-01-21	4.07	4.37	3.89	4.2	0.007	1.10	1.0	0.06	16.31	0.01	1.212	30.95	0.14	8.0	91.1	0.9	-1.65	0.71	0.72	—	4.2	0.003	0.78	0.0	0.05	14.07	0.00	2.396	17.54	0.00	5.2	94.7	0.1	-0.94	1.30	0.72	0.74	—	6565	790	4	0	9	0	0	logfile
✔	8XZV	38799	2025-01-18	2024-01-21	3.16	3.46	3.38	3.4	0.003	0.72	1.0	0.05	17.68	0.01	2.149	14.42	1.48	10.9	88.2	0.9	-2.26	0.67	0.78	1.63	3.4	0.005	0.71	1.0	0.05	17.98	0.01	1.911	12.01	3.55	11.8	87.7	0.5	-2.00	0.35	0.65	0.78	1.60	58999	7497	20	0	1	0	0	logfile
✔	8XZJ	38798	2025-01-16	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.004	0.65	0.0	0.04	15.14	0.00	2.547	7.97	2.32	2.4	97.5	0.1	0.93	1.18	0.74	0.80	3.12	9106	1162	6	0	0	0	0	logfile
✔	8XZF	38794	2025-01-16	2024-01-21	3.0	2.18	—	2.9	0.007	0.72	1.0	0.05	12.98	0.00	2.091	9.31	0.51	4.3	95.5	0.2	-2.36	0.79	0.81	4.27	2.9	0.005	0.66	0.0	0.04	15.89	0.00	2.439	8.02	2.25	4.0	96.0	0.1	0.15	0.52	0.80	0.83	3.70	9062	1161	7	0	1	0	0	logfile
✔	8XZB	38792	2025-01-16	2024-01-21	3.12	4.44	3.15	3.8	0.007	1.64	8.0	0.13	17.47	0.01	1.941	19.64	4.45	1.7	97.8	0.5	2.75	0.82	0.70	2.45	3.8	0.003	0.65	0.0	0.04	17.09	0.00	2.521	5.91	1.15	2.7	97.3	0.0	1.98	1.73	0.89	0.85	2.10	6412	787	3	0	1	0	0	logfile
✔	8XZD	38793	2025-01-17	2024-01-21	3.47	2.63	3.52	2.8	0.018	1.68	10.0	0.15	16.41	0.01	2.052	12.09	5.31	3.0	96.8	0.1	2.42	0.80	0.75	2.60	2.2	0.003	0.66	0.0	0.04	17.42	0.00	2.278	6.68	3.44	3.2	96.8	0.0	1.46	1.11	0.78	0.81	3.16	6436	791	3	0	1	0	0	logfile
✔	8XZH	38796	2025-01-15	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.004	0.61	0.0	0.04	16.43	0.00	2.475	5.74	2.65	2.3	97.7	0.0	1.04	0.45	0.78	0.85	4.07	9048	1159	6	0	0	0	0	logfile
✔	8XZi	38797	2025-01-15	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.7	0.005	0.72	0.0	0.05	14.90	0.00	2.450	5.64	1.63	3.6	96.4	0.0	1.15	1.09	0.75	0.85	3.42	9041	1149	6	0	1	0	0	logfile
✔	8XYZ	38784	2025-01-17	2024-01-20	2.96	2.61	3.07	2.2	0.006	1.02	2.0	0.07	19.01	0.01	2.056	12.35	1.86	1.9	97.8	0.3	0.97	0.81	0.78	2.79	2.4	0.003	0.64	0.0	0.04	18.88	0.00	2.478	4.62	2.15	3.0	97.0	0.0	1.27	0.85	0.80	0.84	2.68	6429	791	3	0	1	0	0	logfile
✔	8XYC	38768	2025-01-16	2024-01-19	2.51	2.68	2.52	2.8	0.005	0.79	0.0	0.04	21.13	0.01	2.167	10.29	2.41	4.7	95.3	0.0	0.21	0.66	0.70	2.20	2.8	0.003	0.65	0.0	0.04	21.69	0.00	2.203	8.70	2.73	2.3	97.7	0.0	1.13	0.58	0.67	0.71	2.06	9244	749	4	153	0	0	0	logfile
✔	8XXW	38763	2025-01-15	2024-01-19	3.03	2.29	3.01	2.0	0.003	0.57	0.0	0.04	16.10	0.01	2.212	6.09	0.12	2.0	98.0	0.0	1.00	0.80	0.81	2.71	2.0	0.003	0.56	0.0	0.04	16.45	0.00	2.400	4.70	1.81	2.1	97.9	0.0	1.50	0.38	0.80	0.82	2.41	7723	950	6	0	4	0	0	logfile
✔	8VQ9	43435	2025-01-16	2024-01-18	2.7	2.88	2.71	2.9	0.010	1.20	0.0	0.08	9.90	0.00	2.511	0.94	0.00	2.9	97.1	0.0	0.54	0.66	0.75	4.36	2.9	0.003	0.57	0.0	0.04	14.10	0.00	2.603	3.36	0.95	1.7	98.3	0.0	1.91	1.11	0.73	0.83	3.55	9513	1278	15	0	27	0	0	logfile
✔	8XXM	38753	2025-01-25	2024-01-18	3.2	3.17	3.15	3.1	0.005	0.89	0.0	0.05	22.16	0.01	2.081	6.64	0.02	7.2	92.6	0.2	-2.18	0.85	0.83	2.41	3.1	0.003	0.65	0.0	0.04	22.31	0.00	1.982	9.22	2.30	7.2	92.6	0.1	-0.95	0.36	0.88	0.88	1.90	76934	5062	42	1723	26	0	0	logfile

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