Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VTi	43523	2025-01-14	2024-01-26	3.9	4.17	3.94	4.0	0.012	1.49	1.0	0.09	14.58	0.01	2.503	5.97	3.54	9.4	90.5	0.2	-3.01	0.62	0.68	1.27	4.0	0.003	0.73	0.0	0.04	15.65	0.00	2.494	9.23	4.33	5.8	94.2	0.0	-0.75	2.89	0.69	0.77	1.30	4667	596	6	0	4	0	0	logfile
✔	8VTB	43522	2025-01-19	2024-01-26	2.5	3.12	2.49	2.9	0.007	0.92	0.0	0.05	17.21	0.01	2.221	6.86	0.59	1.8	98.2	0.0	1.65	0.74	0.85	3.55	2.9	0.004	0.73	0.0	0.04	16.63	0.00	2.490	5.87	2.05	1.6	98.4	0.0	2.53	1.35	0.70	0.82	3.34	13392	1600	8	0	28	0	0	logfile
✔	8Y2i	38856	2025-01-15	2024-01-26	2.92	3.09	2.91	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.62	0.0	0.03	21.80	0.00	2.551	9.03	2.49	9.3	90.7	0.0	-0.86	1.23	0.66	0.71	1.32	8676	723	4	143	0	0	0	logfile
✔	8RT7	19481	2025-01-17	2024-01-25	2.93	4.03	2.97	3.2	0.009	0.75	1.0	0.05	13.72	0.01	2.051	8.94	0.07	2.5	97.5	0.0	-0.67	0.72	0.75	3.20	3.3	0.004	0.76	0.0	0.04	14.90	0.00	2.320	9.02	1.19	2.0	98.0	0.0	0.28	1.24	0.79	0.88	2.52	55802	7184	46	0	0	0	0	logfile
✔	8Y2C	38850	2025-01-13	2024-01-25	3.16	3.42	3.25	3.5	0.003	0.51	0.0	0.04	19.03	0.00	2.160	5.35	0.00	4.2	95.8	0.0	0.76	0.55	0.83	1.39	3.5	0.002	0.48	0.0	0.04	17.60	0.00	2.630	3.21	3.38	3.6	96.4	0.0	1.37	0.17	0.56	0.83	0.87	4207	529	2	0	2	0	0	logfile
✔	8VT7	43519	2025-01-19	2024-01-25	2.66	3.25	2.72	3.1	0.006	0.87	0.0	0.05	18.19	0.00	1.877	4.88	1.58	3.2	96.8	0.0	0.60	0.65	0.82	3.60	3.1	0.003	0.57	0.0	0.04	18.11	0.00	2.050	5.51	1.10	2.6	97.4	0.0	1.12	0.27	0.70	0.86	3.47	13590	1722	8	2	4	0	0	logfile
✔	8RT6	19480	2025-01-17	2024-01-25	3.18	4.21	3.30	3.5	0.011	0.80	0.0	0.05	13.56	0.01	2.066	9.74	0.07	3.0	97.0	0.0	-0.79	0.69	0.72	2.59	3.5	0.003	0.65	0.0	0.04	14.76	0.00	2.280	7.88	1.43	2.0	98.0	0.0	0.62	0.63	0.78	0.88	2.07	55802	7184	46	0	0	0	0	logfile
✔	8Y2D	38851	2025-01-13	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.002	0.48	0.0	0.04	16.89	0.00	2.263	1.56	2.26	2.9	97.1	0.0	1.20	0.24	0.59	0.85	1.86	4189	528	2	0	4	4	0	logfile
✔	8VT3	43517	2025-01-17	2024-01-25	3.33	3.63	3.39	3.6	0.011	0.87	0.0	0.06	18.19	0.01	2.153	4.40	0.00	8.1	91.9	0.0	-3.58	0.79	0.87	3.85	3.6	0.003	0.59	0.0	0.05	14.51	0.00	2.519	3.24	0.94	4.7	95.3	0.0	-1.32	0.96	0.77	0.87	3.05	10758	1377	15	0	18	0	0	logfile
✔	8Y2E	38852	2025-01-13	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.52	0.0	0.04	16.68	0.00	2.629	2.37	4.07	3.3	96.7	0.0	1.78	0.26	0.58	0.84	2.97	4214	528	2	0	3	0	0	logfile
✔	8VSZ	43512	2025-01-19	2024-01-25	3.07	3.28	3.17	3.3	0.003	0.65	0.0	0.05	19.65	0.00	2.032	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.004	0.71	0.0	0.05	18.03	0.00	2.329	9.03	4.62	3.1	96.5	0.3	-0.01	1.26	0.66	0.81	2.37	13220	1580	15	0	25	0	0	logfile
✔	8RT5	19479	2025-01-21	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.005	0.92	0.0	0.06	16.25	0.00	2.458	12.37	1.26	0.8	99.2	0.0	0.21	3.12	0.90	0.89	2.75	17456	2144	32	0	0	0	0	logfile
✔	8RT9	19483	2025-01-22	2024-01-25	2.97	3.65	2.97	3.4	0.007	0.79	1.0	0.05	12.66	0.00	2.370	9.90	0.00	2.4	97.6	0.0	2.55	0.74	0.84	3.34	3.4	0.003	0.65	0.0	0.04	16.46	0.00	2.576	9.67	2.15	1.7	98.3	0.0	3.23	0.71	0.70	0.88	2.50	17866	2395	10	0	0	0	0	logfile
✔	8VT2	43516	2025-01-17	2024-01-25	3.14	3.48	3.27	3.5	0.014	0.96	0.0	0.06	15.92	0.01	2.144	7.00	0.00	7.7	92.3	0.0	-1.30	0.72	0.84	3.85	3.5	0.005	0.63	0.0	0.05	14.26	0.00	2.515	4.16	0.95	6.1	93.9	0.0	-0.22	0.25	0.60	0.78	3.10	10674	1362	12	0	18	0	0	logfile
✔	8RTB	19485	2025-01-19	2024-01-25	3.83	4.65	3.83	4.1	0.006	0.79	0.0	0.05	14.19	0.01	2.126	12.18	0.00	6.7	93.3	0.0	-1.38	0.63	0.65	1.25	4.1	0.004	0.79	0.0	0.04	16.09	0.00	2.408	13.54	2.33	3.6	96.4	0.0	0.00	2.30	0.69	0.84	1.06	14132	1804	9	0	0	0	0	logfile
✔	8RT8	19482	2025-01-17	2024-01-25	3.05	4.11	3.09	3.4	0.006	0.81	0.0	0.05	13.74	0.01	1.973	17.21	0.07	3.8	96.2	0.0	-0.89	0.79	0.86	2.24	3.4	0.004	0.66	0.0	0.04	14.96	0.00	2.407	9.71	1.69	1.9	98.1	0.0	0.47	0.75	0.79	0.89	2.25	55802	7184	46	0	0	0	0	logfile
✔	8VSU	43506	2025-01-20	2024-01-24	2.86	3.11	2.98	3.2	0.013	1.76	0.0	0.09	12.49	0.01	2.529	0.13	0.12	1.8	98.2	0.0	-1.20	0.70	0.85	4.70	3.2	0.004	0.92	0.0	0.04	15.81	0.00	2.321	1.77	0.95	2.1	97.9	0.0	1.71	1.83	0.64	0.86	3.49	15240	941	4	0	1	0	7646	logfile
✔	8VSP	43501	2025-01-17	2024-01-24	3.12	2.30	3.11	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.029	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.54	0.0	0.04	14.05	0.00	2.568	5.26	2.72	2.9	97.1	0.0	2.08	1.37	0.78	0.79	3.04	11388	1476	12	0	3	0	0	logfile
✔	8VSE	43497	2025-01-15	2024-01-23	3.8	4.42	3.88	4.0	0.002	0.51	0.0	0.04	9.30	0.00	2.297	8.67	1.48	4.5	95.5	0.0	1.15	0.78	0.67	0.85	4.0	0.003	0.66	0.0	0.05	13.31	0.00	2.492	11.98	1.14	4.7	95.3	0.0	0.23	1.51	0.83	0.76	1.34	8043	963	13	0	20	0	0	logfile
✔	8RRR	19462	2025-01-14	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.003	0.69	0.0	0.05	15.44	0.00	2.516	6.52	2.98	5.8	94.2	0.0	-4.04	1.53	0.40	0.77	4.98	4925	735	10	0	0	0	0	logfile

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