Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VVC	43550	2025-01-18	2024-01-30	4.32	4.77	4.36	4.4	0.003	0.75	0.0	0.05	14.07	0.00	2.196	13.22	0.25	7.7	92.2	0.1	-0.65	0.60	0.80	—	4.4	0.003	0.73	0.0	0.04	14.10	0.00	2.336	11.73	0.00	6.5	93.4	0.1	0.02	0.52	0.60	0.81	—	10989	1390	1	0	0	0	0	logfile
✔	8VUZ	43545	2025-01-14	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.74	0.0	0.04	17.48	0.00	2.468	11.07	4.61	6.3	93.7	0.0	0.15	0.95	0.75	0.84	1.41	6626	869	4	0	0	0	0	logfile
✔	8VV3	43548	2025-01-18	2024-01-30	2.61	2.94	2.71	2.9	0.004	0.52	0.0	0.04	14.37	0.00	2.233	8.42	0.00	4.2	95.8	0.0	2.23	0.61	0.75	1.70	2.9	0.003	0.59	0.0	0.04	16.78	0.00	2.478	9.51	3.99	4.2	95.8	0.0	2.82	1.59	0.59	0.75	2.04	12172	1548	8	0	4	0	0	logfile
✔	8Y3R	38896	2025-01-20	2024-01-29	3.48	3.48	3.22	3.6	0.003	0.62	0.0	0.05	13.77	0.01	2.188	9.33	0.00	4.3	95.5	0.2	-1.23	0.62	0.71	1.52	3.5	0.005	0.91	3.0	0.06	15.72	0.01	2.067	7.30	3.36	4.2	95.7	0.2	-0.81	0.60	0.71	0.75	1.92	15735	2001	9	0	0	0	0	logfile
✔	8Y3P	38894	2025-01-21	2024-01-29	3.48	3.68	3.58	3.6	0.004	0.76	0.0	0.05	13.55	0.01	2.296	6.88	0.00	4.8	95.2	0.0	-1.81	0.71	0.79	2.80	3.6	0.003	0.59	0.0	0.04	15.45	0.00	2.544	9.18	2.30	4.7	95.3	0.0	-1.13	0.35	0.73	0.84	2.49	17028	2163	9	0	0	0	0	logfile
✔	8RU0	19501	2025-01-18	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.004	0.86	1.0	0.05	16.36	0.00	1.986	5.45	2.73	3.2	96.7	0.1	0.31	1.31	0.64	0.83	2.31	11660	1476	8	0	11	0	0	logfile
✔	8VUV	43541	2025-01-15	2024-01-29	3.69	3.94	3.73	3.9	0.003	0.63	0.0	0.04	17.33	0.00	2.159	8.86	0.11	7.7	92.1	0.2	-1.24	0.68	0.74	1.50	3.9	0.005	0.70	0.0	0.05	17.74	0.00	2.536	6.65	5.20	9.3	90.6	0.2	-1.27	0.32	0.68	0.74	1.61	8586	1154	4	0	0	0	0	logfile
✔	8RTT	19496	2025-01-22	2024-01-29	3.56	3.72	3.51	3.6	0.004	0.52	0.0	0.04	16.49	0.00	1.740	5.80	0.20	2.2	97.8	0.0	0.18	0.79	0.85	1.76	3.6	0.004	0.62	0.0	0.04	16.85	0.00	1.908	6.43	2.25	2.6	97.4	0.0	1.01	0.38	0.79	0.87	1.98	18155	2274	16	0	14	0	0	logfile
✔	8Y3N	38892	2025-01-13	2024-01-29	3.8	4.11	3.77	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.2	0.005	0.71	0.0	0.05	15.55	0.01	2.590	8.67	1.97	10.5	89.5	0.0	-1.61	1.03	0.43	0.79	3.15	3694	494	4	0	0	0	0	logfile
✔	8Y3U	38899	2025-01-17	2024-01-29	2.98	3.75	2.99	3.4	0.004	0.73	0.0	0.05	18.33	0.01	2.130	6.39	4.19	5.5	94.1	0.4	-1.73	0.76	0.72	2.35	3.5	0.003	0.75	0.0	0.05	16.99	0.00	2.383	7.47	3.35	6.3	93.7	0.1	-1.16	3.41	0.78	0.76	2.42	11273	1447	15	0	15	0	0	logfile
✔	8VUL	43532	2025-01-14	2024-01-29	3.83	4.04	6.77	4.0	0.004	0.68	0.0	0.04	16.80	0.01	2.218	7.73	0.27	8.8	90.9	0.3	-1.67	0.75	0.82	1.77	4.0	0.004	0.69	0.0	0.04	17.22	0.00	2.427	6.01	3.41	9.7	89.9	0.3	-1.43	0.30	0.74	0.82	1.70	7158	963	4	0	0	0	0	logfile
✔	8Y3T	38898	2025-01-13	2024-01-29	2.61	2.83	2.38	2.8	0.008	0.72	0.0	0.05	12.61	0.00	2.231	9.51	0.00	3.5	96.5	0.0	0.24	0.44	0.80	4.67	2.8	0.004	0.58	0.0	0.05	16.32	0.00	2.660	6.43	2.06	1.7	98.3	0.0	0.95	1.04	0.46	0.83	3.79	1790	238	2	0	0	0	0	logfile
✔	8Y3o	38893	2025-01-21	2024-01-29	2.75	3.08	2.94	3.1	0.003	0.75	0.0	0.05	13.07	0.01	2.217	6.58	0.00	4.1	95.9	0.0	-1.28	0.64	0.76	3.15	3.1	0.004	0.63	0.0	0.05	16.01	0.00	2.529	8.99	2.08	4.5	95.5	0.0	-1.09	0.36	0.62	0.77	3.05	17058	2163	9	0	0	0	0	logfile
✔	8Y3V	38900	2025-01-13	2024-01-29	3.46	3.65	2.37	3.7	0.006	0.73	0.0	0.05	12.74	0.01	2.342	6.61	0.00	11.1	88.9	0.0	-2.06	0.48	0.85	4.09	3.7	0.003	0.63	0.0	0.05	15.12	0.00	2.572	5.29	1.70	7.9	92.1	0.0	-0.73	0.28	0.45	0.84	3.52	3785	513	4	0	0	0	0	logfile
✔	8Y3M	38889	2025-01-21	2024-01-29	3.25	2.64	—	3.2	0.007	1.17	0.0	0.06	11.37	0.01	2.299	4.87	0.11	11.1	88.3	0.6	-5.56	0.67	0.56	1.24	3.3	0.003	0.71	0.0	0.04	14.96	0.00	2.359	8.81	1.24	9.1	90.5	0.4	-1.37	1.91	0.76	0.75	1.75	16793	2017	3	0	0	0	0	logfile
✔	8RU2	19503	2025-01-20	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.63	0.0	0.04	18.19	0.00	1.975	10.19	3.05	3.9	96.0	0.1	0.24	1.33	0.72	0.76	0.84	14773	1849	8	0	6	0	0	logfile
✔	8Y3Q	38895	2025-01-20	2024-01-29	2.98	3.14	2.96	3.2	0.003	0.55	0.0	0.04	12.96	0.00	2.176	4.85	0.00	3.3	96.7	0.0	-0.01	0.67	0.78	3.59	3.2	0.003	0.57	0.0	0.04	15.41	0.00	2.571	4.59	3.14	3.0	97.0	0.0	0.37	0.51	0.73	0.84	3.16	15738	2016	9	0	0	0	0	logfile
✔	8Y32	38866	2025-01-14	2024-01-28	4.13	3.53	3.37	3.5	0.004	0.70	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.65	0.0	0.04	14.72	0.00	2.321	6.46	0.14	6.0	93.8	0.3	-0.89	1.62	0.62	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8VU5	43526	2025-01-14	2024-01-28	3.39	3.60	3.36	3.6	0.005	0.81	1.0	0.05	17.68	0.01	2.195	16.26	1.44	7.6	92.4	0.0	-1.20	0.67	0.73	1.46	3.6	0.004	0.68	0.0	0.04	17.95	0.00	2.500	14.36	3.85	6.6	93.4	0.0	-1.01	0.32	0.66	0.73	1.96	5616	719	3	0	0	0	0	logfile
✔	8Y2i	38856	2025-01-15	2024-01-26	2.92	3.09	2.91	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.62	0.0	0.03	21.80	0.00	2.551	9.03	2.49	9.3	90.7	0.0	-0.86	1.23	0.66	0.71	1.32	8676	723	4	143	0	0	0	logfile

• ← previous
• Page 42 of 550
• next →