Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y6M	38991	2025-01-14	2024-02-02	2.91	3.15	2.93	3.2	0.006	0.70	0.0	0.05	18.43	0.01	2.065	13.26	7.32	3.3	96.7	0.0	0.60	0.50	0.70	2.60	3.2	0.003	0.59	0.0	0.04	18.23	0.00	2.579	12.51	4.42	2.2	97.8	0.0	1.44	1.07	0.50	0.69	1.85	6502	826	2	0	0	0	0	logfile
✔	8Y6N	38992	2025-01-14	2024-02-02	3.4	3.60	3.34	3.6	0.009	1.52	14.0	0.10	18.06	0.01	2.030	20.21	9.97	14.4	81.6	4.0	-3.25	0.60	0.74	2.52	3.6	0.003	0.76	0.0	0.04	16.79	0.00	2.608	11.49	4.36	7.2	92.8	0.0	-1.58	0.53	0.59	0.73	2.37	5858	768	2	0	0	0	0	logfile
✔	8Y69	38982	2025-01-22	2024-02-02	3.38	4.15	3.51	3.8	0.003	0.66	0.0	0.04	9.88	0.00	2.194	8.52	3.56	5.4	94.5	0.1	-2.16	0.73	0.80	2.04	3.8	0.003	0.73	0.0	0.04	13.33	0.00	2.299	8.72	2.94	6.0	93.9	0.1	-1.32	1.30	0.72	0.79	1.65	17577	2255	10	0	2	0	0	logfile
✔	8VWP	43593	2025-01-20	2024-02-02	3.21	3.46	3.23	3.5	0.012	1.50	4.0	0.09	10.39	0.01	2.024	1.40	0.00	2.2	97.6	0.2	0.79	0.77	0.84	4.06	3.5	0.003	0.57	0.0	0.04	13.35	0.00	2.630	2.16	1.50	2.6	97.4	0.0	0.81	0.48	0.75	0.88	3.75	14820	2012	8	0	4	0	0	logfile
✔	8Y6K	38989	2025-01-14	2024-02-02	3.94	2.95	4.01	2.0	0.006	0.97	0.0	0.05	15.52	0.01	2.136	21.47	0.33	4.8	95.2	0.0	-0.44	0.66	0.59	0.59	1.8	0.003	0.73	0.0	0.04	17.77	0.00	2.406	13.77	3.11	4.4	95.6	0.0	0.42	0.54	0.66	0.59	0.66	5872	741	2	0	3	0	0	logfile
✔	8Y6A	38983	2025-01-16	2024-02-02	2.72	3.72	2.80	3.2	0.004	0.73	0.0	0.06	15.69	0.01	2.212	14.67	0.48	6.5	93.0	0.5	-1.89	0.79	0.64	1.10	3.3	0.004	0.92	0.0	0.05	16.08	0.00	2.126	15.35	1.90	7.4	92.5	0.2	-1.52	0.94	0.80	0.66	1.28	9786	1206	10	0	16	0	0	logfile
✔	8Y6J	38988	2025-01-14	2024-02-02	3.46	3.69	3.47	3.7	0.003	0.55	0.0	0.04	16.14	0.00	2.181	6.75	0.00	3.3	96.7	0.0	3.00	0.58	0.79	1.79	3.7	0.003	0.52	0.0	0.04	16.71	0.00	2.567	6.38	3.07	4.3	95.7	0.0	3.49	0.23	0.57	0.79	1.51	6650	850	2	0	0	0	0	logfile
✔	8Y6L	38990	2025-01-14	2024-02-02	3.4	3.59	3.35	3.6	0.006	1.02	8.0	0.06	17.31	0.01	1.397	18.84	3.53	10.0	88.5	1.5	-1.61	0.58	0.74	2.10	3.6	0.003	0.82	0.0	0.04	17.83	0.00	2.394	13.50	6.62	8.4	91.4	0.2	-0.26	0.54	0.57	0.74	1.25	6256	818	2	0	0	0	0	logfile
✔	8VWW	43604	2025-01-20	2024-02-02	3.9	4.09	3.83	4.1	0.003	0.63	0.0	0.04	13.70	0.01	2.056	4.35	2.05	4.5	95.4	0.1	-0.82	0.67	0.73	2.95	4.1	0.004	0.69	0.0	0.04	15.41	0.00	2.363	10.51	1.79	5.8	94.2	0.0	-0.46	1.32	0.73	0.78	2.19	13801	899	5	0	0	0	6855	logfile
✔	8Y65	38966	2025-01-13	2024-02-01	3.51	3.77	3.42	3.8	0.004	0.73	0.0	0.04	13.65	0.01	2.231	9.02	0.27	3.7	96.3	0.0	1.81	0.43	0.55	0.74	3.8	0.002	0.57	0.0	0.04	15.35	0.00	2.602	9.30	2.13	3.4	96.6	0.0	1.85	0.36	0.45	0.57	0.74	3565	467	2	0	1	0	0	logfile
✔	8RVN	19525	2025-01-18	2024-02-01	3.5	3.62	3.47	3.5	0.004	0.72	0.0	0.05	13.59	0.02	1.949	4.85	0.30	3.8	96.2	0.0	-0.44	0.78	0.85	2.25	3.5	0.004	0.60	0.0	0.05	15.08	0.00	2.443	3.39	1.94	4.4	95.6	0.0	-0.20	1.16	0.78	0.85	2.16	11924	1540	8	0	12	0	0	logfile
✔	8VWH	43586	2025-01-22	2024-02-01	3.06	3.44	3.07	3.4	0.002	0.44	0.0	0.04	16.10	0.00	2.115	10.64	0.10	4.5	95.5	0.0	-0.56	0.53	0.73	2.23	3.4	0.004	0.61	0.0	0.04	17.00	0.00	2.394	10.48	3.90	5.1	94.9	0.0	-0.41	1.41	0.53	0.74	1.92	18889	2329	15	0	7	0	0	logfile
✔	8Y66	38968	2025-01-13	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.62	0.0	0.04	16.22	0.00	2.507	7.51	4.17	2.4	97.6	0.0	1.82	0.35	0.47	0.70	1.02	3606	467	2	0	1	0	0	logfile
✔	8Y52	38928	2025-01-14	2024-01-31	2.9	4.04	2.90	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.008	0.99	1.0	0.05	12.83	0.01	1.843	31.23	1.98	2.2	97.8	0.0	-0.90	3.24	0.67	0.83	1.62	7380	931	5	0	1	0	0	logfile
✔	8Y5J	38937	2025-01-26	2024-01-31	2.94	4.00	3.10	3.5	0.004	0.62	0.0	0.05	13.62	0.01	2.216	6.70	0.08	6.5	93.2	0.2	-0.78	0.87	0.87	2.60	3.5	0.002	0.59	0.0	0.04	14.78	0.00	2.432	6.00	1.02	6.3	93.5	0.2	-0.63	1.01	0.87	0.87	2.36	24146	3018	10	0	35	0	0	logfile
✔	8Y5H	38935	2025-01-18	2024-01-31	3.1	2.41	3.18	2.1	0.007	0.85	1.0	0.05	14.34	0.01	2.206	8.39	0.52	7.0	93.0	0.0	-1.85	0.79	0.79	3.24	2.1	0.004	0.66	0.0	0.04	16.97	0.01	2.137	5.47	3.02	5.2	94.8	0.0	-0.07	0.44	0.81	0.81	2.03	12405	1562	7	0	1	1	0	logfile
✔	8VVH	43559	2025-01-15	2024-01-31	3.95	4.19	3.95	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.003	0.65	0.0	0.04	16.96	0.00	2.525	6.10	5.87	7.3	92.6	0.1	-1.30	0.30	0.69	0.80	1.98	6877	941	4	0	0	0	0	logfile
✔	8Y5F	38933	2025-01-16	2024-01-31	3.13	2.36	3.22	2.2	0.003	0.66	1.0	0.05	17.96	0.01	2.255	6.71	1.84	4.3	95.5	0.2	0.71	0.78	0.79	2.17	2.1	0.003	0.64	0.0	0.04	17.87	0.01	2.418	4.86	3.23	4.1	95.8	0.1	0.79	0.86	0.79	0.81	1.71	9846	1240	4	0	0	0	0	logfile
✔	8RV2	19522	2025-01-21	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.59	0.0	0.04	17.24	0.00	1.979	7.06	2.36	2.5	97.5	0.0	0.43	1.33	0.78	0.81	1.78	17248	2178	10	0	9	0	0	logfile
✔	8Y5G	38934	2025-01-16	2024-01-31	3.0	2.33	3.11	2.1	0.004	0.67	0.0	0.04	16.92	0.01	2.131	5.35	2.40	4.1	95.8	0.1	-0.20	0.79	0.81	3.03	2.1	0.003	0.63	0.0	0.04	16.98	0.01	2.277	3.45	3.04	4.4	95.5	0.1	0.90	0.83	0.80	0.82	2.71	9860	1240	7	0	5	0	0	logfile

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