Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VXY	43643	2025-01-18	2024-02-06	3.19	3.47	3.32	3.5	0.003	0.81	0.0	0.06	16.14	0.00	2.215	14.40	0.00	4.8	95.2	0.0	-0.15	0.61	0.62	1.03	3.5	0.004	0.69	0.0	0.04	18.62	0.00	2.502	17.03	1.71	4.8	95.2	0.0	-0.92	1.42	0.65	0.67	0.87	12324	1406	5	62	1	0	0	logfile
✔	8Y8Z	39064	2025-01-16	2024-02-06	3.29	3.66	3.38	3.6	0.007	0.63	0.0	0.04	11.55	0.00	1.761	8.07	6.41	2.6	97.4	0.0	-2.01	0.49	0.64	2.05	3.6	0.003	0.65	0.0	0.04	14.68	0.00	2.316	10.51	3.05	3.0	97.0	0.0	0.70	0.82	0.59	0.77	2.28	9082	1130	6	0	6	4	0	logfile
✔	8Y94	39069	2025-01-15	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.003	0.67	0.0	0.04	15.25	0.00	2.533	10.26	2.94	2.9	97.1	0.0	0.96	1.15	0.59	0.78	1.00	9032	1130	2	0	0	0	0	logfile
✔	8Y90	39065	2025-01-16	2024-02-06	3.15	3.57	3.32	3.5	0.003	0.57	0.0	0.03	11.77	0.00	2.167	8.97	6.09	2.7	97.3	0.0	-1.83	0.50	0.63	1.25	3.5	0.003	0.69	0.0	0.04	14.90	0.00	2.328	11.35	3.68	3.6	96.4	0.0	0.53	1.19	0.59	0.78	1.34	9058	1130	3	0	3	5	0	logfile
✔	8Y8K	39050	2025-01-15	2024-02-06	2.89	3.09	2.92	3.2	0.003	0.54	0.0	0.04	16.02	0.01	2.248	3.63	2.28	2.5	97.5	0.0	1.68	0.61	0.80	1.21	3.2	0.003	0.49	0.0	0.04	16.56	0.01	2.614	2.78	2.85	2.4	97.6	0.0	2.06	0.26	0.57	0.79	1.24	8052	1028	2	0	0	0	0	logfile
✔	8Y9F	39076	2025-01-20	2024-02-06	3.3	4.20	3.35	3.7	0.004	0.67	0.0	0.04	15.17	0.00	2.244	9.51	0.18	3.8	96.2	0.0	0.70	0.74	0.82	2.88	3.7	0.003	0.58	0.0	0.04	15.62	0.00	2.431	7.70	0.90	3.2	96.8	0.0	1.00	0.39	0.74	0.86	2.38	15505	1968	10	0	4	0	0	logfile
✔	8Y93	39068	2025-01-16	2024-02-06	3.0	3.45	3.17	3.4	0.003	0.60	0.0	0.04	11.79	0.00	2.127	7.36	5.15	2.2	97.8	0.0	-1.85	0.51	0.68	2.29	3.4	0.003	0.68	0.0	0.04	15.62	0.00	2.298	8.30	3.36	3.3	96.7	0.0	1.02	1.08	0.62	0.83	2.14	9055	1130	3	0	3	0	0	logfile
✔	8Y92	39067	2025-01-16	2024-02-06	3.29	3.68	3.39	3.6	0.003	0.64	1.0	0.04	11.67	0.00	1.954	8.79	4.73	3.1	96.9	0.0	-1.19	0.50	0.67	2.32	3.6	0.003	0.63	0.0	0.04	15.40	0.00	2.308	10.62	3.89	3.7	96.3	0.0	1.31	0.72	0.60	0.79	2.03	9078	1130	6	0	5	5	0	logfile
✔	8Y9C	39073	2025-01-19	2024-02-06	3.0	3.24	3.07	3.2	0.003	0.49	0.0	0.04	14.35	0.00	2.211	7.37	0.46	3.7	96.3	0.0	1.00	0.71	0.78	2.73	3.2	0.004	0.58	0.0	0.05	16.36	0.00	2.278	5.83	1.51	3.3	96.7	0.0	0.96	0.66	0.73	0.82	2.75	13400	1674	3	0	1	0	0	logfile
✔	8Y95	39070	2025-01-16	2024-02-06	3.24	3.62	3.40	3.6	0.003	0.59	0.0	0.04	11.30	0.01	1.402	11.16	4.43	5.0	95.0	0.0	-1.89	0.50	0.65	1.63	3.6	0.003	0.62	0.0	0.04	14.90	0.00	2.328	10.84	3.27	3.1	96.9	0.0	0.73	1.10	0.56	0.78	2.52	9018	1124	4	0	6	0	0	logfile
✔	8VXT	43639	2025-01-19	2024-02-06	4.25	2.73	4.22	2.2	0.003	0.71	0.0	0.08	14.08	0.01	2.224	7.78	0.00	3.5	96.5	0.0	0.59	0.65	0.63	—	2.0	0.003	0.68	0.0	0.04	14.70	0.00	2.472	10.77	0.00	4.1	95.9	0.0	1.35	0.85	0.67	0.67	—	13896	1740	12	0	6	0	0	logfile
✔	8Y7Z	39027	2025-01-14	2024-02-05	2.57	2.82	2.60	2.9	0.004	0.66	0.0	0.04	20.76	0.00	1.958	14.35	0.33	3.7	96.3	0.0	-0.35	0.69	0.79	3.13	2.9	0.005	0.65	0.0	0.04	21.11	0.01	1.928	11.56	3.95	3.7	96.3	0.0	-0.22	0.24	0.65	0.80	3.25	6488	708	5	41	1	0	0	logfile
✔	8RWK	19549	2025-01-20	2024-02-05	3.8	3.22	3.89	3.7	0.020	1.77	4.0	0.10	13.76	0.01	2.244	5.27	0.00	1.4	98.6	0.0	0.22	0.65	0.71	2.53	3.2	0.003	0.64	0.0	0.04	16.19	0.00	2.392	5.96	2.08	2.6	97.4	0.0	0.25	2.40	0.74	0.77	2.52	15416	1980	8	0	4	0	0	logfile
✔	8Y84	39032	2025-01-13	2024-02-05	2.98	3.18	2.95	3.2	0.007	1.15	0.0	0.06	15.18	0.01	2.269	4.95	0.00	1.5	98.5	0.0	-1.59	0.43	0.76	2.26	3.2	0.004	0.68	0.0	0.04	16.73	0.00	2.611	6.07	1.27	1.9	98.1	0.0	2.02	0.31	0.42	0.78	1.55	2168	268	5	0	1	0	0	logfile
✔	8Y81	39029	2025-01-16	2024-02-05	2.89	3.13	2.95	3.2	0.007	1.00	0.0	0.06	16.04	0.01	2.274	5.39	0.10	3.8	96.1	0.1	-1.30	0.64	0.78	2.56	3.2	0.004	0.59	0.0	0.04	16.23	0.00	2.463	8.41	1.92	3.9	96.1	0.0	0.59	1.13	0.57	0.77	2.41	8915	1077	13	0	14	0	0	logfile
✔	8Y85	39034	2025-01-15	2024-02-05	2.73	2.89	2.74	3.0	0.004	0.76	4.0	0.04	16.59	0.01	2.314	3.19	0.68	2.5	97.5	0.0	2.04	0.59	0.78	2.03	3.0	0.003	0.57	0.0	0.04	16.88	0.01	2.615	2.35	1.94	2.5	97.5	0.0	2.43	0.23	0.59	0.78	1.83	8116	1028	4	0	4	0	0	logfile
✔	8VXC	43616	2025-01-16	2024-02-04	2.93	2.24	2.94	1.9	0.003	0.51	0.0	0.04	14.76	0.00	2.206	9.15	0.00	3.2	96.8	0.0	0.25	0.75	0.72	1.60	1.9	0.004	0.65	0.0	0.04	17.44	0.01	2.542	10.81	1.90	4.0	96.0	0.0	0.23	0.60	0.75	0.73	1.77	9390	1139	3	22	0	0	0	logfile
✔	8VXA	43615	2025-01-16	2024-02-03	2.79	2.23	2.81	1.9	0.003	0.53	0.0	0.04	15.67	0.00	2.204	10.67	0.00	3.1	96.9	0.0	0.60	0.75	0.73	2.94	1.9	0.003	0.63	0.0	0.04	18.17	0.00	2.477	10.45	3.16	2.7	97.3	0.0	0.91	0.58	0.77	0.77	2.38	9431	1139	3	24	0	0	0	logfile
✔	8Y6P	38994	2025-01-16	2024-02-03	3.9	4.26	4.01	4.1	0.004	0.90	0.0	0.05	16.87	0.01	2.064	19.68	1.34	7.1	91.8	1.1	-0.98	0.81	0.77	1.08	4.1	0.004	0.80	0.0	0.05	17.24	0.01	2.476	13.30	3.40	8.0	91.2	0.7	-0.83	2.43	0.82	0.79	0.99	9977	1228	1	0	0	0	0	logfile
✔	8VX9	43613	2025-01-17	2024-02-03	2.65	2.17	2.70	1.9	0.004	0.62	0.0	0.04	13.77	0.00	2.221	11.85	0.08	4.1	95.9	0.0	-0.43	0.74	0.70	2.71	1.5	0.004	0.68	0.0	0.04	16.65	0.01	2.454	11.98	1.42	3.9	96.1	0.0	0.00	3.19	0.73	0.70	2.09	11244	1433	2	0	0	0	0	logfile

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