Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VZN	43683	2025-01-14	2024-02-12	2.77	2.94	2.79	2.9	0.015	1.53	0.0	0.08	15.04	0.04	2.330	3.53	2.81	4.9	95.1	0.0	-3.34	0.61	0.85	3.75	2.9	0.003	0.61	0.0	0.04	15.32	0.00	2.532	5.14	1.20	2.0	98.0	0.0	1.83	0.97	0.61	0.87	3.71	4656	596	4	0	1	0	0	logfile
✔	8VZo	43684	2025-01-14	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.003	0.57	0.0	0.04	15.16	0.00	2.615	4.69	1.74	2.1	97.9	0.0	2.40	0.51	0.67	0.88	3.65	4796	615	4	0	1	0	0	logfile
✔	8YB4	39108	2025-01-15	2024-02-11	3.1	3.56	3.21	3.4	0.004	0.62	0.0	0.04	18.65	0.02	2.205	7.05	0.33	4.6	95.4	0.0	0.26	0.68	0.74	1.67	3.4	0.002	0.56	0.0	0.04	18.29	0.00	2.444	4.60	3.31	3.5	96.4	0.1	1.24	0.91	0.69	0.83	1.71	8400	1067	5	0	2	0	0	logfile
✔	8YAK	39101	2025-01-26	2024-02-09	2.37	2.72	2.60	2.8	0.006	0.68	0.0	0.05	17.34	0.00	2.063	6.38	0.33	2.0	98.0	0.0	0.22	0.70	0.89	4.27	2.8	0.003	0.56	0.0	0.05	16.39	0.00	2.061	2.74	1.55	1.7	98.3	0.0	0.35	0.95	0.73	0.90	4.88	24216	3192	16	0	24	0	0	logfile
✔	8YAR	39105	2025-01-20	2024-02-09	3.6	4.58	3.79	3.9	0.004	0.69	1.0	0.04	15.79	0.01	2.232	8.64	0.06	3.0	97.0	0.0	1.04	0.73	0.82	1.32	3.9	0.002	0.63	0.0	0.04	16.19	0.00	2.478	7.69	1.09	2.9	97.1	0.0	1.02	1.58	0.74	0.84	1.19	15482	1960	11	0	5	0	0	logfile
✔	8VYN	43672	2025-01-25	2024-02-09	2.8	3.16	—	3.2	0.004	0.57	0.0	0.05	12.54	0.01	2.237	3.35	0.00	5.0	95.0	0.0	-0.26	0.73	0.85	4.72	3.2	0.005	0.63	0.0	0.05	14.91	0.00	2.369	4.94	3.53	3.2	96.8	0.0	0.02	0.51	0.60	0.83	4.11	23763	2958	27	0	33	0	0	logfile
✔	8VYM	43667	2025-01-22	2024-02-09	3.4	3.70	3.67	3.7	0.002	0.44	0.0	0.04	11.25	0.00	2.230	6.31	0.66	3.8	96.1	0.0	-0.34	0.75	0.87	2.98	3.7	0.004	0.58	0.0	0.04	13.72	0.00	2.405	6.99	1.99	4.4	95.6	0.0	0.28	1.04	0.74	0.87	2.80	18289	2218	30	0	45	0	0	logfile
✔	8YAJ	39100	2025-01-20	2024-02-09	3.2	4.14	3.27	3.6	0.006	0.70	0.0	0.05	15.60	0.00	2.209	7.97	0.00	3.6	96.4	0.0	0.53	0.75	0.83	2.69	3.6	0.002	0.56	0.0	0.04	15.60	0.00	2.476	7.02	0.85	2.6	97.4	0.0	0.95	1.13	0.75	0.86	2.52	15483	1963	11	0	5	0	0	logfile
✔	8YAL	39102	2025-01-20	2024-02-09	3.1	4.01	3.08	3.4	0.004	0.68	1.0	0.05	15.43	0.01	2.212	8.50	0.12	3.2	96.8	0.0	0.40	0.74	0.80	3.36	3.4	0.002	0.56	0.0	0.04	15.96	0.00	2.488	6.00	0.48	2.4	97.6	0.0	1.15	1.55	0.75	0.86	2.79	15498	1960	11	0	5	0	0	logfile
✔	8YAG	39098	2025-01-25	2024-02-09	2.33	2.57	2.47	2.6	0.005	0.67	0.0	0.05	15.23	0.00	1.802	5.09	0.00	1.8	98.2	0.0	0.00	0.71	0.87	5.30	2.6	0.002	0.51	0.0	0.04	16.20	0.00	2.115	3.30	0.70	1.5	98.5	0.0	0.39	0.93	0.72	0.88	5.16	23960	3192	16	0	16	0	0	logfile
✔	8YAA	39093	2025-01-14	2024-02-08	3.34	3.03	3.28	3.1	0.006	0.87	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.2	0.003	0.68	0.0	0.05	15.67	0.00	2.448	5.47	1.59	6.7	93.3	0.0	-3.96	0.94	0.79	0.86	2.85	6985	844	17	0	36	0	0	logfile
✔	8VYF	43659	2025-01-14	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.004	0.61	0.0	0.05	12.24	0.00	2.563	1.90	2.59	2.6	97.4	0.0	0.78	0.52	0.68	0.88	5.09	5132	715	9	0	12	0	0	logfile
✔	8VYG	43660	2025-01-13	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.002	0.62	0.0	0.04	15.40	0.00	2.574	5.77	2.39	3.2	96.8	0.0	0.39	1.46	0.54	0.77	2.50	3204	416	4	0	1	0	0	logfile
✔	8VY9	43650	2025-01-15	2024-02-07	2.88	2.27	2.92	2.0	0.005	0.70	0.0	0.05	14.27	0.00	2.245	3.56	0.00	4.2	95.8	0.0	-0.69	0.78	0.80	3.74	2.1	0.005	0.61	0.0	0.04	16.62	0.00	2.418	6.78	2.10	4.9	95.1	0.0	1.00	0.48	0.79	0.82	3.27	8668	1134	6	0	2	0	0	logfile
✔	8RXT	19579	2025-01-24	2024-02-07	3.93	4.22	3.85	3.9	0.005	0.92	0.0	0.04	16.93	0.01	2.188	8.29	0.62	6.3	93.0	0.7	-0.09	0.80	0.75	1.03	3.9	0.003	0.91	0.0	0.04	17.52	0.01	2.438	14.32	2.67	7.1	92.5	0.4	-0.38	1.06	0.80	0.80	1.05	22258	2891	9	0	4	0	0	logfile
✔	8VY7	43647	2025-01-15	2024-02-07	2.68	2.20	2.71	2.0	0.005	0.71	0.0	0.05	14.10	0.00	2.245	3.71	0.00	3.5	96.5	0.0	-0.25	0.80	0.82	3.65	2.0	0.003	0.60	0.0	0.04	15.68	0.00	2.508	6.51	1.28	3.7	96.3	0.0	1.29	1.30	0.81	0.82	3.43	8811	1136	6	0	2	0	0	logfile
✔	8RXK	19577	2025-01-18	2024-02-07	3.23	4.03	3.38	3.6	0.005	0.77	0.0	0.04	19.42	0.00	2.093	9.71	0.25	7.1	92.2	0.7	-0.95	0.72	0.83	2.64	3.6	0.003	0.73	0.0	0.04	19.77	0.00	2.497	7.43	2.71	6.9	92.7	0.4	0.06	0.83	0.72	0.85	2.39	12162	1446	7	48	3	0	0	logfile
✔	8RXS	19578	2025-01-21	2024-02-07	2.8	3.57	2.87	3.4	0.003	0.61	0.0	0.04	16.04	0.00	2.088	9.16	0.45	6.6	93.1	0.3	-1.73	0.65	0.78	3.22	3.4	0.003	0.66	0.0	0.04	16.58	0.00	2.337	4.18	1.13	7.1	92.7	0.2	-0.38	2.16	0.64	0.82	3.53	16267	1080	6	0	0	0	8245	logfile
✔	8Y93	39068	2025-01-16	2024-02-06	3.0	3.45	3.17	3.4	0.003	0.60	0.0	0.04	11.79	0.00	2.127	7.36	5.15	2.2	97.8	0.0	-1.85	0.51	0.68	2.29	3.4	0.003	0.68	0.0	0.04	15.62	0.00	2.298	8.30	3.36	3.3	96.7	0.0	1.02	1.08	0.62	0.83	2.14	9055	1130	3	0	3	0	0	logfile
✔	8Y8Z	39064	2025-01-16	2024-02-06	3.29	3.66	3.38	3.6	0.007	0.63	0.0	0.04	11.55	0.00	1.761	8.07	6.41	2.6	97.4	0.0	-2.01	0.49	0.64	2.05	3.6	0.003	0.65	0.0	0.04	14.68	0.00	2.316	10.51	3.05	3.0	97.0	0.0	0.70	0.82	0.59	0.77	2.28	9082	1130	6	0	6	4	0	logfile

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