Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W22	43737	2025-01-13	2024-02-19	4.0	4.25	3.95	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.2	0.003	0.64	0.0	0.04	12.12	0.00	2.621	2.90	5.56	3.3	96.7	0.0	0.31	0.74	0.73	0.78	—	3750	629	3	0	0	0	0	logfile
✔	8YDB	39167	2025-01-25	2024-02-19	3.4	4.36	3.41	3.7	0.003	0.58	0.0	0.04	19.62	0.00	2.225	5.90	0.42	6.2	93.8	0.0	-0.84	0.88	0.76	2.54	3.7	0.004	0.60	0.0	0.04	19.66	0.00	2.471	7.17	3.35	6.5	93.5	0.0	-0.19	0.46	0.93	0.90	2.59	23880	2682	12	103	0	0	0	logfile
✔	8S32	19687	2025-01-17	2024-02-19	2.45	2.64	2.69	2.8	0.004	0.60	0.0	0.04	16.86	0.00	2.225	7.68	1.61	2.6	97.2	0.2	1.91	0.62	0.81	2.58	2.7	0.003	0.59	0.0	0.04	18.20	0.00	2.539	7.34	3.93	2.7	97.1	0.2	1.53	0.59	0.67	0.86	2.56	55552	7518	28	0	0	0	0	logfile
✔	8YC0	39128	2025-01-13	2024-02-17	4.12	4.24	3.86	4.2	0.004	0.77	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.003	0.76	0.0	0.04	13.94	0.00	2.465	10.53	0.00	7.4	92.6	0.0	-0.63	1.35	0.60	0.71	—	4635	583	9	0	1	0	0	logfile
✔	8YBR	39122	2025-01-20	2024-02-16	2.57	2.26	2.59	2.1	0.005	0.67	0.0	0.04	12.45	0.00	2.237	3.61	0.70	6.3	93.7	0.0	-4.55	0.82	0.81	2.58	2.0	0.003	0.62	0.0	0.04	15.24	0.00	2.517	2.65	1.53	5.1	94.9	0.0	-0.17	0.54	0.84	0.85	2.68	15150	1941	3	0	0	0	0	logfile
✔	8YBQ	39121	2025-01-18	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.56	0.0	0.04	14.14	0.00	2.630	1.84	1.77	2.2	97.8	0.0	1.43	1.26	0.63	0.85	2.42	11700	1506	9	0	3	66	0	logfile
✔	8W1C	43719	2025-01-25	2024-02-15	3.6	3.61	3.65	3.7	0.003	0.53	0.0	0.04	13.36	0.01	2.203	5.60	0.05	2.2	97.8	0.0	0.86	0.69	0.82	1.91	3.8	0.003	0.74	0.0	0.04	16.63	0.00	2.410	8.14	2.43	2.8	97.2	0.0	0.62	1.37	0.71	0.85	1.88	77135	9580	15	0	0	0	0	logfile
✔	8W19	43716	2025-01-25	2024-02-15	4.4	4.24	4.38	4.1	0.004	0.80	0.0	0.05	14.56	0.01	2.202	6.88	0.01	4.1	95.9	0.0	-0.95	0.56	0.76	—	4.1	0.003	0.74	0.0	0.05	14.08	0.00	2.298	11.34	0.01	4.4	95.6	0.0	-0.37	1.37	0.56	0.82	—	76760	9525	15	0	0	0	0	logfile
✔	8W15	43715	2025-01-24	2024-02-15	2.72	3.63	3.61	3.3	0.003	0.57	1.0	0.04	16.09	0.00	2.133	6.71	1.36	2.9	97.1	0.0	0.92	0.87	0.89	2.90	3.3	0.003	0.60	0.0	0.04	16.61	0.00	2.482	6.57	1.70	2.7	97.2	0.0	2.12	0.33	0.86	0.87	2.14	21207	2710	2	0	0	0	0	logfile
✔	8W0R	43712	2025-01-14	2024-02-14	2.8	2.89	2.83	2.9	0.005	0.71	0.0	0.11	12.17	0.01	2.073	0.57	0.00	2.4	97.6	0.0	0.55	0.61	0.77	3.21	2.9	0.003	0.52	0.0	0.04	14.57	0.00	2.652	5.14	1.34	1.4	98.6	0.0	2.23	1.74	0.60	0.78	2.90	3556	426	4	0	2	0	0	logfile
✔	8YBK	39120	2025-01-16	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.57	0.0	0.03	27.80	0.00	2.539	4.85	2.41	1.6	98.4	0.0	2.87	1.11	0.79	0.83	2.65	10261	708	10	228	0	0	0	logfile
✔	8S0T	19628	2025-01-17	2024-02-14	2.3	2.16	2.46	2.3	0.013	2.14	4.0	0.14	16.21	0.02	2.480	4.30	3.24	3.6	95.8	0.6	-2.68	0.56	0.73	4.61	2.5	0.004	0.65	0.0	0.04	16.77	0.00	2.446	7.43	0.90	2.8	97.1	0.2	0.25	1.05	0.57	0.75	3.61	10665	630	7	0	1	145	5404	logfile
✔	8YBJ	39119	2025-01-18	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.04	28.40	0.01	2.583	3.08	1.91	0.5	99.5	0.0	2.67	0.26	0.76	0.84	3.83	11953	758	10	290	0	0	0	logfile
✔	8W0i	43710	2025-01-18	2024-02-13	3.5	4.45	3.68	3.8	0.003	0.49	0.0	0.04	9.62	0.00	1.742	4.48	0.03	4.4	95.6	0.0	1.01	0.77	0.80	0.92	3.8	0.005	0.56	0.0	0.04	11.75	0.00	1.725	5.81	0.83	7.0	93.0	0.0	0.39	1.02	0.77	0.80	0.85	56870	3557	12	0	15	0	28489	logfile
✔	8W0A	43706	2025-01-17	2024-02-13	3.2	3.72	3.22	3.6	0.003	0.59	0.0	0.04	19.61	0.00	1.561	10.62	0.09	8.1	91.9	0.0	-1.76	0.72	0.71	1.67	3.6	0.003	0.90	1.0	0.04	19.68	0.00	2.072	8.90	4.81	7.3	92.7	0.0	-1.29	0.46	0.70	0.72	0.96	10216	1272	4	14	0	0	0	logfile
✔	8YBE	39117	2025-01-13	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.005	0.71	0.0	0.04	16.53	0.00	2.598	11.36	1.00	2.2	97.8	0.0	1.31	0.32	0.68	0.83	5.54	3110	370	3	0	2	197	0	logfile
✔	8RZL	19608	2025-01-15	2024-02-12	2.65	3.69	2.75	3.2	0.012	1.57	0.0	0.10	15.37	0.01	2.347	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.66	0.0	0.04	11.36	0.00	2.493	3.57	2.18	2.7	97.3	0.0	1.24	0.47	0.87	0.90	5.10	8895	915	35	0	155	0	0	logfile
✔	8VZo	43684	2025-01-14	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.003	0.57	0.0	0.04	15.16	0.00	2.615	4.69	1.74	2.1	97.9	0.0	2.40	0.51	0.67	0.88	3.65	4796	615	4	0	1	0	0	logfile
✔	8RZ9	19607	2025-01-15	2024-02-12	3.02	2.39	3.08	3.0	0.010	1.26	4.0	0.10	17.55	0.01	1.685	25.25	3.61	6.0	94.0	0.0	-1.70	0.76	0.76	0.82	2.1	0.005	0.72	0.0	0.05	18.12	0.00	1.816	17.18	5.73	5.2	94.8	0.0	-0.35	1.39	0.75	0.73	1.05	8571	1067	4	0	4	0	0	logfile
✔	8VZN	43683	2025-01-14	2024-02-12	2.77	2.94	2.79	2.9	0.015	1.53	0.0	0.08	15.04	0.04	2.330	3.53	2.81	4.9	95.1	0.0	-3.34	0.61	0.85	3.75	2.9	0.003	0.61	0.0	0.04	15.32	0.00	2.532	5.14	1.20	2.0	98.0	0.0	1.83	0.97	0.61	0.87	3.71	4656	596	4	0	1	0	0	logfile

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