Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9ARG	43781	2025-01-24	2024-02-23	4.05	4.35	4.12	4.2	0.002	0.57	0.0	0.04	9.08	0.00	2.028	3.98	4.82	4.4	95.6	0.0	-2.99	0.70	0.67	—	4.2	0.003	0.64	0.0	0.04	9.83	0.00	2.526	6.41	0.00	4.9	95.1	0.0	-0.40	1.10	0.72	0.72	—	21008	3166	4	0	0	0	0	logfile
✔	9ARE	43779	2025-01-22	2024-02-23	3.72	4.00	3.78	3.9	0.007	0.98	36.0	0.07	11.57	0.01	2.020	10.72	5.24	4.8	95.1	0.1	-2.47	0.65	0.65	1.31	3.9	0.004	0.64	0.0	0.04	12.97	0.00	2.523	4.25	5.81	5.8	94.2	0.0	0.26	0.52	0.68	0.71	1.57	19222	3172	8	0	0	0	0	logfile
✔	8YET	39203	2025-01-16	2024-02-23	4.16	4.38	4.16	4.3	0.003	0.74	0.0	0.04	17.60	0.00	2.213	8.71	0.09	5.8	94.1	0.1	1.34	0.62	0.75	—	4.3	0.003	0.64	0.0	0.04	16.35	0.00	2.375	8.01	0.00	5.3	94.5	0.2	1.31	1.62	0.62	0.75	—	10102	1206	3	0	2	0	0	logfile
✔	8S5K	19738	2025-01-20	2024-02-23	3.8	3.96	3.75	3.9	0.004	0.75	0.0	0.04	14.70	0.01	1.967	7.13	0.15	3.0	96.8	0.1	0.58	0.76	0.72	1.58	3.8	0.003	0.58	0.0	0.04	15.46	0.00	2.284	6.48	1.05	3.9	96.1	0.0	0.37	1.02	0.76	0.72	1.36	63840	4056	16	0	8	0	31936	logfile
✔	8YF1	39207	2025-01-16	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.58	0.0	0.04	16.65	0.00	2.526	9.85	2.07	2.4	97.6	0.0	1.53	0.29	0.42	0.63	0.48	9187	1156	4	0	2	0	0	logfile
✔	9ARi	43783	2025-01-23	2024-02-23	3.9	4.18	4.02	4.1	0.007	1.12	45.0	0.07	10.71	0.01	1.816	12.63	9.33	6.9	92.9	0.3	-3.31	0.70	0.72	1.20	4.1	0.003	0.68	0.0	0.04	12.71	0.00	2.406	6.52	4.93	8.3	91.7	0.0	-0.79	1.22	0.69	0.71	1.15	20756	3178	6	0	0	0	0	logfile
✔	9ARH	43782	2025-01-25	2024-02-23	3.69	4.00	3.71	4.0	0.013	1.58	74.0	0.11	12.97	0.01	1.335	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.004	0.73	0.0	0.05	14.56	0.00	2.432	7.36	6.00	8.8	91.1	0.1	-1.07	1.62	0.71	0.75	1.15	22792	3182	10	0	6	0	0	logfile
✔	8YEX	39204	2025-01-14	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8S5i	19736	2025-01-13	2024-02-23	3.1	3.24	3.20	3.3	0.004	0.58	0.0	0.04	13.53	0.00	2.087	3.04	0.58	1.9	97.8	0.2	0.50	0.57	0.65	2.82	3.2	0.003	0.56	0.0	0.04	15.28	0.00	2.389	5.29	1.32	2.6	97.3	0.1	1.14	0.73	0.65	0.81	2.83	47880	3042	12	0	6	0	23952	logfile
✔	8S4U	19716	2025-01-13	2024-02-22	3.09	3.17	2.95	3.1	0.006	0.65	1.0	0.05	14.85	0.01	2.272	7.16	0.24	4.2	95.8	0.0	-0.73	0.61	0.80	2.33	3.1	0.004	0.63	0.0	0.04	15.66	0.00	2.567	5.90	4.02	3.0	97.0	0.0	1.25	0.31	0.66	0.84	2.47	3980	502	3	0	1	0	0	logfile
✔	8YE9	39191	2025-01-19	2024-02-22	3.43	3.69	3.54	3.7	0.007	1.01	0.0	0.06	15.50	0.01	2.195	3.79	0.24	7.9	92.1	0.0	-4.35	0.73	0.75	2.64	3.7	0.002	0.60	0.0	0.04	17.39	0.00	2.475	4.41	1.61	4.1	95.9	0.0	-0.24	1.30	0.73	0.74	1.66	13559	1448	3	90	0	0	0	logfile
✔	8YEo	39200	2025-01-25	2024-02-22	3.44	4.39	3.47	3.8	0.003	0.60	0.0	0.04	20.20	0.00	2.252	6.90	0.42	5.0	95.0	0.0	-0.97	0.92	0.85	2.26	3.8	0.005	0.66	0.0	0.04	20.20	0.00	2.435	9.24	3.52	6.3	93.7	0.0	-0.36	0.48	0.93	0.90	2.15	24197	2680	12	119	0	0	0	logfile
✔	8YE6	39190	2025-01-19	2024-02-22	2.95	3.10	2.95	3.1	0.010	1.07	0.0	0.06	15.48	0.01	2.259	3.40	0.16	5.4	94.6	0.0	-4.09	0.71	0.80	4.13	3.1	0.003	0.60	0.0	0.04	17.99	0.00	2.280	5.16	2.00	2.9	97.1	0.0	0.45	0.66	0.72	0.81	2.85	13603	1447	3	92	0	0	0	logfile
✔	8W35	43762	2025-01-13	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.002	0.47	0.0	0.03	20.23	0.00	2.570	2.90	1.00	2.2	97.8	0.0	1.54	0.39	0.64	0.75	2.79	2611	234	3	34	0	0	0	logfile
✔	8YE3	39188	2025-01-17	2024-02-21	3.4	2.34	3.25	2.1	0.003	0.53	0.0	0.04	17.69	0.00	2.028	9.43	0.89	3.6	96.4	0.0	-0.31	0.71	0.75	2.40	2.2	0.005	0.65	0.0	0.05	18.35	0.00	2.501	9.23	5.66	4.7	95.3	0.0	-0.25	1.22	0.79	0.81	2.00	10491	1356	3	0	0	0	0	logfile
✔	8W2H	43748	2025-01-13	2024-02-20	2.6	2.65	2.66	2.7	0.009	1.22	0.0	0.05	14.68	0.01	2.013	3.69	0.53	3.3	96.6	0.1	-0.06	0.64	0.80	4.17	2.7	0.002	0.54	0.0	0.04	17.01	0.00	1.932	4.61	1.92	2.0	98.0	0.0	1.31	1.27	0.59	0.80	3.15	46944	3044	8	0	20	0	23240	logfile
✔	8S32	19687	2025-01-17	2024-02-19	2.45	2.64	2.69	2.8	0.004	0.60	0.0	0.04	16.86	0.00	2.225	7.68	1.61	2.6	97.2	0.2	1.91	0.62	0.81	2.58	2.7	0.003	0.59	0.0	0.04	18.20	0.00	2.539	7.34	3.93	2.7	97.1	0.2	1.53	0.59	0.67	0.86	2.56	55552	7518	28	0	0	0	0	logfile
✔	8S35	19688	2025-01-14	2024-02-19	2.9	4.25	3.12	3.6	0.004	0.73	0.0	0.04	18.95	0.00	1.971	9.69	0.82	0.3	99.7	0.0	-0.29	0.90	0.82	1.67	3.6	0.008	0.73	0.0	0.04	19.26	0.00	2.255	13.65	1.23	5.7	94.3	0.0	-0.09	0.37	0.90	0.83	1.80	48653	2936	13	112	1	0	23571	logfile
✔	8W20	43736	2025-01-20	2024-02-19	4.3	4.55	4.30	4.4	0.008	1.34	2.0	0.06	6.79	0.01	2.278	1.60	0.45	2.6	97.2	0.3	1.23	0.68	0.69	—	4.5	0.003	0.63	0.0	0.04	8.09	0.00	2.612	2.50	0.00	3.5	96.5	0.0	1.57	1.82	0.70	0.72	—	15412	2814	11	0	0	0	0	logfile
✔	8W22	43737	2025-01-13	2024-02-19	4.0	4.25	3.95	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.2	0.003	0.64	0.0	0.04	12.12	0.00	2.621	2.90	5.56	3.3	96.7	0.0	0.31	0.74	0.73	0.78	—	3750	629	3	0	0	0	0	logfile

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