Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9ASL	43818	2025-01-25	2024-02-26	3.5	3.93	3.52	3.9	0.003	0.66	0.0	0.04	18.71	0.01	2.155	16.35	0.48	5.1	94.9	0.0	-1.52	0.76	0.75	1.34	3.9	0.004	0.80	0.0	0.04	18.56	0.00	2.187	12.30	4.31	4.3	95.6	0.1	-0.31	0.74	0.75	0.77	0.99	23128	2964	4	0	0	0	0	logfile
✔	9AST	43825	2025-01-15	2024-02-26	3.07	2.24	3.08	2.1	0.004	0.70	0.0	0.05	15.90	0.00	0.114	6.75	2.16	2.4	97.2	0.4	0.39	0.74	0.77	2.51	2.1	0.003	0.53	0.0	0.04	16.02	0.00	2.518	4.14	3.80	2.4	97.5	0.1	1.13	0.31	0.74	0.78	2.26	8876	1134	6	0	0	0	0	logfile
✔	9ATB	43829	2025-01-19	2024-02-26	3.4	3.85	3.47	3.6	0.008	0.79	0.0	0.05	13.58	0.00	2.010	5.66	0.04	4.2	95.8	0.0	0.23	0.44	0.88	1.68	3.6	0.002	0.47	0.0	0.04	15.14	0.00	2.492	2.89	1.04	2.6	97.4	0.0	2.41	0.37	0.43	0.86	1.04	63316	8690	22	0	0	0	0	logfile
✔	9ASK	43817	2025-01-18	2024-02-26	3.6	4.04	3.67	3.9	0.003	0.60	0.0	0.04	18.52	0.00	2.275	14.03	0.40	4.4	95.6	0.0	-1.03	0.71	0.70	0.95	3.9	0.003	0.66	0.0	0.04	19.04	0.00	2.488	12.27	4.95	4.6	95.2	0.1	-0.79	1.06	0.70	0.70	0.97	11564	1482	2	0	0	0	0	logfile
✔	8YG6	39237	2025-01-18	2024-02-26	2.77	3.81	2.97	3.3	0.003	0.66	0.0	0.05	16.65	0.02	2.027	6.90	0.24	6.9	93.1	0.0	-0.49	0.91	0.86	2.65	3.3	0.003	0.61	0.0	0.04	14.02	0.00	2.502	4.54	0.87	6.7	93.3	0.0	-0.32	1.07	0.92	0.88	2.88	11442	1395	9	0	18	0	0	logfile
✔	8YG8	39238	2025-01-18	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.3	0.003	0.68	0.0	0.04	14.47	0.00	2.431	5.76	0.87	7.8	92.2	0.0	-0.80	1.05	0.94	0.88	2.54	11414	1395	8	0	16	0	0	logfile
✔	8S5W	19752	2025-01-13	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.004	0.62	0.0	0.04	18.02	0.00	2.584	5.37	6.18	4.0	96.0	0.0	0.69	0.89	0.61	0.85	2.62	4009	502	3	0	1	0	0	logfile
✔	9ASH	43814	2025-01-24	2024-02-25	2.58	2.83	2.69	2.9	0.005	0.64	0.0	0.04	16.63	0.00	1.963	10.97	0.00	6.8	93.1	0.1	-0.64	0.70	0.76	2.77	2.9	0.003	0.58	0.0	0.04	18.43	0.00	1.994	9.21	1.81	5.6	94.3	0.0	-0.27	0.35	0.71	0.82	2.26	22309	2624	14	61	5	2	0	logfile
✔	8YFT	39229	2025-01-14	2024-02-25	3.16	4.17	3.25	3.6	0.004	0.63	2.0	0.05	13.01	0.01	2.261	4.81	0.58	4.1	95.6	0.3	-0.17	0.81	0.66	1.68	3.8	0.003	0.63	0.0	0.04	14.80	0.00	2.499	6.23	1.74	3.6	96.3	0.1	0.45	1.74	0.87	0.79	1.91	6508	783	7	0	10	0	0	logfile
✔	8YFU	39230	2025-01-15	2024-02-25	4.59	4.78	4.51	4.6	0.003	0.67	0.0	0.04	12.85	0.00	2.081	12.72	0.00	5.3	94.4	0.3	1.47	0.55	0.70	—	4.6	0.003	0.67	0.0	0.04	12.82	0.00	2.368	11.40	0.00	5.5	94.3	0.3	1.85	0.50	0.55	0.71	—	8419	1161	2	0	0	0	0	logfile
✔	9ASD	43813	2025-01-13	2024-02-25	3.3	3.51	3.27	3.6	0.011	1.51	4.0	0.09	11.03	0.02	2.348	2.18	1.35	4.4	95.6	0.0	0.14	0.67	0.76	4.80	3.5	0.004	0.75	0.0	0.05	13.66	0.00	2.603	4.36	1.79	3.7	96.1	0.2	-0.01	1.18	0.70	0.82	4.04	3013	419	4	0	2	0	0	logfile
✔	8YFW	39231	2025-01-15	2024-02-25	3.65	3.82	3.63	3.7	0.004	0.74	0.0	0.04	15.86	0.01	2.152	13.17	0.28	4.7	95.0	0.3	1.70	0.56	0.70	1.25	3.7	0.003	0.67	0.0	0.04	16.25	0.00	2.489	10.13	3.13	3.7	96.0	0.3	2.70	1.19	0.56	0.71	0.98	8419	1161	2	0	0	0	0	logfile
✔	8YFX	39232	2025-01-14	2024-02-25	3.56	3.75	3.47	3.7	0.004	0.65	0.0	0.04	16.59	0.00	2.071	9.89	0.28	6.1	93.9	0.0	0.74	0.52	0.71	1.68	3.7	0.003	0.62	0.0	0.04	17.07	0.00	2.486	8.37	2.98	5.2	94.8	0.0	1.64	1.17	0.51	0.70	1.44	6588	792	2	0	0	0	0	logfile
✔	8YF4	39210	2025-01-14	2024-02-24	3.41	3.59	3.35	3.6	0.003	0.55	0.0	0.04	17.00	0.00	2.064	7.25	0.86	5.2	94.8	0.0	0.92	0.56	0.73	1.36	3.6	0.003	0.58	0.0	0.04	17.23	0.00	2.507	5.97	4.43	5.2	94.8	0.0	1.66	1.59	0.55	0.73	1.74	6620	786	4	0	2	0	0	logfile
✔	8YFD	39220	2025-01-14	2024-02-24	3.57	3.79	3.57	3.8	0.003	0.68	0.0	0.04	17.76	0.00	2.195	9.97	0.57	6.1	93.5	0.4	0.20	0.56	0.77	1.34	3.8	0.003	0.63	0.0	0.04	17.95	0.00	2.521	7.61	5.11	6.3	93.4	0.3	0.94	1.17	0.56	0.77	1.22	6588	792	2	0	0	0	0	logfile
✔	8YFE	39221	2025-01-21	2024-02-24	3.47	4.22	3.29	3.7	0.002	0.54	0.0	0.04	13.90	0.00	2.126	10.77	0.05	4.4	95.6	0.0	-0.05	0.86	0.81	1.57	3.7	0.003	0.60	0.0	0.04	15.67	0.00	2.288	8.36	1.94	4.5	95.5	0.0	0.38	0.38	0.87	0.82	1.52	17315	2107	4	0	0	0	0	logfile
✔	9ASB	43811	2025-01-22	2024-02-24	3.4	2.15	—	2.9	0.005	0.67	0.0	0.04	13.48	0.00	2.168	9.24	0.00	3.4	96.6	0.0	-0.23	0.79	0.79	3.28	2.9	0.004	0.58	0.0	0.04	15.36	0.00	2.290	7.07	1.86	3.2	96.8	0.0	0.00	0.36	0.81	0.82	3.06	18185	2243	13	0	26	0	0	logfile
✔	8YF5	39211	2025-01-22	2024-02-24	3.78	4.22	3.58	3.8	0.003	0.53	0.0	0.04	13.98	0.00	2.098	11.01	0.00	4.6	95.4	0.0	1.15	0.85	0.84	1.64	3.8	0.003	0.61	0.0	0.04	15.35	0.00	2.437	7.91	1.33	4.1	95.9	0.0	1.25	0.36	0.85	0.83	1.47	18476	2250	5	0	0	0	0	logfile
✔	8YEX	39204	2025-01-14	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8YF1	39207	2025-01-16	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.58	0.0	0.04	16.65	0.00	2.526	9.85	2.07	2.4	97.6	0.0	1.53	0.29	0.42	0.63	0.48	9187	1156	4	0	2	0	0	logfile

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