Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YHE	39288	2025-01-24	2024-02-28	3.07	3.30	3.14	3.3	0.008	1.12	1.0	0.06	18.57	0.01	2.133	9.90	2.27	5.0	94.9	0.0	-2.65	0.69	0.81	2.09	3.3	0.004	0.61	0.0	0.04	18.59	0.00	2.259	9.43	4.24	3.3	96.7	0.0	0.11	1.05	0.70	0.82	2.55	21183	2561	22	76	9	0	0	logfile
✔	8YH9	39285	2025-01-23	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.004	0.67	0.0	0.04	20.62	0.00	2.455	12.36	6.06	8.7	91.3	0.0	-2.44	0.93	0.67	0.73	1.07	21153	2450	10	60	0	0	0	logfile
✔	9ATP	43832	2025-01-19	2024-02-27	3.5	4.08	3.59	3.8	0.005	0.73	0.0	0.05	15.18	0.01	2.043	15.12	0.21	6.2	93.5	0.3	-1.38	0.75	0.76	2.34	3.8	0.003	0.63	0.0	0.05	15.57	0.00	2.389	10.08	2.37	5.8	94.0	0.2	-1.04	0.60	0.76	0.79	2.00	13004	1636	6	0	0	0	0	logfile
✔	9ATW	43835	2025-01-24	2024-02-27	3.5	3.26	3.56	4.2	0.012	2.18	0.0	0.13	15.03	0.01	2.675	7.20	0.00	5.3	94.7	0.0	-3.62	0.74	0.74	3.46	4.2	0.004	0.69	0.0	0.06	15.24	0.00	2.397	25.78	8.00	3.6	96.4	0.0	-3.47	1.35	0.73	0.78	1.83	21952	1344	64	0	0	0	11840	logfile
✔	8YH5	39281	2025-01-15	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	1.09	0.0	0.05	16.27	0.00	1.852	15.78	2.94	4.5	95.4	0.1	-0.18	1.16	0.64	0.66	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH6	39282	2025-01-15	2024-02-27	3.62	4.12	—	3.7	0.012	1.43	0.0	0.09	14.43	0.03	2.215	12.85	0.94	4.9	95.0	0.1	-2.37	0.57	0.50	0.66	3.8	0.004	0.84	0.0	0.05	16.44	0.00	2.467	17.46	3.15	4.7	95.3	0.0	-0.24	1.51	0.64	0.65	0.44	8706	1104	6	0	1	0	0	logfile
✔	8YH0	39278	2025-01-15	2024-02-27	2.86	3.63	—	3.3	0.004	0.66	0.0	0.06	13.13	0.00	2.070	8.58	0.00	3.7	96.2	0.1	-0.02	0.68	0.71	1.98	3.3	0.004	0.90	0.0	0.05	15.95	0.01	2.484	12.44	2.41	4.5	95.5	0.0	-0.10	1.59	0.71	0.79	1.59	8693	1103	6	0	1	0	0	logfile
✔	8YH3	39280	2025-01-15	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.81	0.0	0.04	16.09	0.00	2.410	12.79	2.41	4.3	95.7	0.0	0.32	1.85	0.67	0.73	0.54	8691	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2025-01-15	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.003	0.81	0.0	0.05	16.04	0.00	2.460	14.87	2.52	4.1	95.9	0.1	-0.08	1.56	0.65	0.71	0.57	8690	1103	6	0	1	0	0	logfile
✔	8YGG	39249	2025-01-18	2024-02-26	2.98	3.85	3.05	3.4	0.003	0.65	1.0	0.04	15.45	0.00	2.233	9.55	2.07	2.7	97.2	0.1	0.81	0.90	0.88	2.30	3.4	0.003	0.61	0.0	0.04	15.93	0.00	2.480	7.61	2.00	3.0	97.0	0.0	0.93	0.34	0.90	0.89	2.18	12096	1490	2	0	0	0	0	logfile
✔	9ATB	43829	2025-01-19	2024-02-26	3.4	3.85	3.47	3.6	0.008	0.79	0.0	0.05	13.58	0.00	2.010	5.66	0.04	4.2	95.8	0.0	0.23	0.44	0.88	1.68	3.6	0.002	0.47	0.0	0.04	15.14	0.00	2.492	2.89	1.04	2.6	97.4	0.0	2.41	0.37	0.43	0.86	1.04	63316	8690	22	0	0	0	0	logfile
✔	9ASP	43822	2025-01-18	2024-02-26	3.2	4.18	3.26	3.3	0.004	0.62	0.0	0.04	19.27	0.00	2.196	10.51	0.09	5.1	94.9	0.0	0.10	0.77	0.67	1.49	3.2	0.003	0.54	0.0	0.04	19.29	0.00	2.501	6.71	1.88	4.9	95.1	0.0	0.54	1.20	0.83	0.84	1.53	12227	1256	6	96	4	1	0	logfile
✔	8YGH	39250	2025-01-18	2024-02-26	2.77	3.71	2.80	3.3	0.003	0.64	0.0	0.04	16.16	0.00	2.230	9.85	1.74	4.3	95.7	0.0	0.53	0.90	0.88	2.42	3.3	0.003	0.61	0.0	0.04	16.45	0.00	2.403	6.91	1.21	4.5	95.5	0.0	0.43	0.30	0.90	0.88	2.26	12244	1510	2	0	0	0	0	logfile
✔	9ASJ	43816	2025-01-18	2024-02-26	3.5	3.98	3.57	3.9	0.005	0.71	0.0	0.04	18.82	0.00	2.184	13.04	0.24	4.6	95.4	0.0	-1.01	0.73	0.72	1.19	3.9	0.003	0.67	0.0	0.04	18.96	0.00	2.518	11.46	3.19	5.7	94.2	0.1	-0.22	1.41	0.69	0.71	1.37	11626	1482	4	0	2	0	0	logfile
✔	9ASQ	43823	2025-01-18	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.004	0.58	0.0	0.04	18.15	0.00	2.347	4.45	1.25	3.5	96.5	0.0	1.82	0.30	0.84	0.88	2.46	12359	1257	7	100	4	2	0	logfile
✔	9ASM	43819	2025-01-18	2024-02-26	2.8	3.54	2.88	3.1	0.003	0.51	0.0	0.04	17.97	0.00	2.283	3.96	1.04	2.7	97.3	0.0	1.39	0.75	0.63	2.90	3.1	0.003	0.54	0.0	0.04	17.78	0.00	2.255	3.28	0.57	3.3	96.7	0.0	1.97	0.92	0.84	0.90	2.61	11648	1180	6	95	4	2	0	logfile
✔	8YG8	39238	2025-01-18	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.3	0.003	0.68	0.0	0.04	14.47	0.00	2.431	5.76	0.87	7.8	92.2	0.0	-0.80	1.05	0.94	0.88	2.54	11414	1395	8	0	16	0	0	logfile
✔	8YG6	39237	2025-01-18	2024-02-26	2.77	3.81	2.97	3.3	0.003	0.66	0.0	0.05	16.65	0.02	2.027	6.90	0.24	6.9	93.1	0.0	-0.49	0.91	0.86	2.65	3.3	0.003	0.61	0.0	0.04	14.02	0.00	2.502	4.54	0.87	6.7	93.3	0.0	-0.32	1.07	0.92	0.88	2.88	11442	1395	9	0	18	0	0	logfile
✔	9ASK	43817	2025-01-18	2024-02-26	3.6	4.04	3.67	3.9	0.003	0.60	0.0	0.04	18.52	0.00	2.275	14.03	0.40	4.4	95.6	0.0	-1.03	0.71	0.70	0.95	3.9	0.003	0.66	0.0	0.04	19.04	0.00	2.488	12.27	4.95	4.6	95.2	0.1	-0.79	1.06	0.70	0.70	0.97	11564	1482	2	0	0	0	0	logfile
✔	8S5U	19750	2025-01-13	2024-02-26	3.28	3.39	3.21	3.3	0.009	0.71	0.0	0.04	15.77	0.01	2.338	5.38	0.47	3.6	96.4	0.0	-0.65	0.65	0.83	3.31	3.3	0.005	0.61	0.0	0.04	16.50	0.00	2.594	4.25	1.89	2.6	97.4	0.0	1.53	0.95	0.70	0.87	2.96	3998	502	3	0	2	0	0	logfile

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