Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YJV	39351	2025-01-17	2024-03-03	3.51	2.76	3.49	3.5	0.007	1.08	0.0	0.06	20.74	0.01	2.317	5.90	0.10	5.0	95.0	0.0	-3.60	0.71	0.75	2.39	3.5	0.003	0.61	0.0	0.04	21.34	0.00	2.550	11.64	1.77	3.0	97.0	0.0	-1.48	0.47	0.72	0.76	1.88	9938	1111	8	65	0	0	0	logfile
✔	8YJY	39353	2025-01-13	2024-03-03	3.3	3.57	3.37	3.6	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.68	0.0	0.04	17.92	0.01	2.493	9.02	2.42	4.8	95.2	0.0	1.55	0.86	0.66	0.74	1.42	4254	530	2	0	0	0	0	logfile
✔	9AVJ	43903	2025-01-25	2024-03-03	3.72	4.52	3.80	4.3	0.010	1.08	1.0	0.05	16.00	0.01	1.914	8.99	0.37	3.5	96.5	0.0	-0.50	0.76	0.64	0.64	4.3	0.003	0.78	0.0	0.05	17.14	0.00	1.813	11.98	4.08	4.5	95.5	0.0	-0.42	1.37	0.84	0.75	0.83	23188	2988	12	0	10	0	0	logfile
✔	8YJW	39352	2025-01-16	2024-03-03	3.55	2.85	3.51	3.5	0.006	1.05	0.0	0.06	20.20	0.01	2.288	5.58	0.00	4.4	95.6	0.0	-3.20	0.72	0.77	2.33	3.5	0.004	0.66	0.0	0.04	21.01	0.00	2.372	12.60	2.58	4.3	95.7	0.0	-0.93	0.51	0.73	0.79	2.24	9946	1116	8	63	0	0	0	logfile
✔	8YJR	39347	2025-01-16	2024-03-02	3.51	3.58	3.59	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.7	0.005	0.94	0.0	0.04	21.30	0.00	2.381	13.11	1.66	4.7	95.3	0.0	-1.01	0.50	0.83	0.82	2.53	9962	1113	8	65	0	0	0	logfile
✔	9AVG	43901	2025-01-21	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	1.8	0.004	0.58	0.0	0.04	14.78	0.00	2.338	7.07	1.94	3.4	96.6	0.0	-0.18	0.90	0.76	0.75	2.34	17498	2210	13	0	25	0	0	logfile
✔	8YJL	39344	2025-01-16	2024-03-02	3.51	3.46	3.50	3.5	0.005	1.00	0.0	0.06	19.38	0.01	2.339	5.77	0.00	3.7	96.3	0.0	-2.81	0.77	0.79	2.64	3.5	0.004	0.66	0.0	0.04	20.62	0.00	2.374	13.42	2.79	3.5	96.5	0.0	-1.19	0.94	0.77	0.81	2.64	9853	1115	8	59	0	0	0	logfile
✔	8YJQ	39346	2025-01-16	2024-03-02	3.51	3.25	3.48	3.6	0.005	0.97	0.0	0.05	19.57	0.01	2.366	5.25	0.00	4.4	95.6	0.0	-3.80	0.79	0.79	2.19	3.6	0.003	0.60	0.0	0.04	20.49	0.00	2.472	12.01	1.96	2.9	97.1	0.0	-1.06	0.99	0.80	0.81	2.59	9856	1115	8	59	0	0	0	logfile
✔	8YJS	39348	2025-01-16	2024-03-02	3.55	3.39	3.54	3.5	0.006	1.03	0.0	0.06	19.68	0.01	2.347	5.87	0.00	5.3	94.7	0.0	-3.62	0.78	0.79	2.45	3.6	0.004	0.63	0.0	0.04	20.53	0.00	2.469	11.85	1.14	3.8	96.2	0.0	-1.00	0.49	0.79	0.81	2.33	9880	1111	8	62	0	0	0	logfile
✔	8YJU	39350	2025-01-17	2024-03-02	3.78	3.49	3.71	3.5	0.005	1.03	0.0	0.06	19.79	0.01	2.324	5.53	0.00	5.1	94.9	0.0	-3.41	0.79	0.77	1.99	3.5	0.005	0.71	0.0	0.05	20.95	0.00	2.395	14.79	2.28	4.9	95.1	0.0	-1.18	0.52	0.82	0.79	2.16	9939	1111	8	65	0	0	0	logfile
✔	8YJH	39342	2025-01-16	2024-03-01	3.68	3.64	3.65	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.003	0.64	0.0	0.04	19.75	0.00	2.493	11.71	1.86	3.4	96.6	0.0	-1.10	0.47	0.81	0.81	1.76	9735	1115	8	53	0	0	0	logfile
✔	8Yi7	39311	2025-01-14	2024-02-29	3.57	3.79	3.54	3.8	0.013	1.60	4.0	0.11	13.65	0.00	2.122	9.97	1.75	4.2	95.8	0.0	0.53	0.67	0.77	2.41	3.7	0.003	0.62	0.0	0.04	14.96	0.00	2.513	5.80	2.23	2.9	97.1	0.0	0.27	1.48	0.71	0.84	2.00	5586	697	6	0	4	0	0	logfile
✔	8S7E	19768	2025-01-14	2024-02-29	3.4	3.72	3.45	3.6	0.003	0.55	0.0	0.04	18.59	0.00	1.902	20.70	0.25	7.8	92.2	0.0	-1.51	0.59	0.55	0.28	3.6	0.003	0.60	0.0	0.05	18.95	0.00	2.378	13.21	2.96	5.6	94.4	0.0	-1.24	0.47	0.58	0.56	-0.12	7312	466	2	0	0	0	3648	logfile
✔	8S7D	19766	2025-01-14	2024-02-29	3.2	3.46	3.22	3.5	0.003	0.57	0.0	0.04	19.45	0.00	2.090	13.28	4.70	3.5	96.5	0.0	-0.33	0.55	0.71	1.65	3.5	0.004	0.62	0.0	0.04	19.18	0.00	2.468	13.00	4.86	4.8	95.2	0.0	-0.46	0.33	0.59	0.72	1.99	5488	691	4	0	0	0	0	logfile
✔	8YHE	39288	2025-01-24	2024-02-28	3.07	3.30	3.14	3.3	0.008	1.12	1.0	0.06	18.57	0.01	2.133	9.90	2.27	5.0	94.9	0.0	-2.65	0.69	0.81	2.09	3.3	0.004	0.61	0.0	0.04	18.59	0.00	2.259	9.43	4.24	3.3	96.7	0.0	0.11	1.05	0.70	0.82	2.55	21183	2561	22	76	9	0	0	logfile
✔	8YHX	39302	2025-01-22	2024-02-28	2.81	3.42	3.03	3.3	0.005	0.71	0.0	0.04	16.45	0.01	1.197	15.85	0.97	6.8	93.0	0.2	-3.42	0.75	0.78	1.84	3.3	0.004	0.77	3.0	0.05	17.77	0.00	2.118	14.55	2.49	7.4	92.5	0.1	-1.45	1.25	0.75	0.82	2.32	69979	8427	24	0	6	0	0	logfile
✔	9AU7	43872	2025-01-21	2024-02-28	3.4	2.42	—	3.3	0.004	0.66	0.0	0.04	14.95	0.01	2.224	13.06	0.21	4.4	95.6	0.0	0.16	0.61	0.54	0.16	2.0	0.005	0.65	0.0	0.04	16.19	0.01	2.230	13.47	1.55	5.3	94.6	0.1	0.44	1.34	0.67	0.64	1.73	17304	1079	4	0	0	0	8703	logfile
✔	9AU2	43842	2025-01-25	2024-02-28	3.1	3.34	3.11	3.3	0.005	0.63	2.0	0.05	9.79	0.01	2.030	3.71	1.16	3.0	96.9	0.1	-0.91	0.63	0.73	5.07	3.3	0.002	0.51	0.0	0.04	12.10	0.00	2.428	2.57	2.27	1.9	98.1	0.0	0.43	0.36	0.78	0.86	3.88	23745	3419	20	0	49	0	0	logfile
✔	9AUC	43877	2025-01-17	2024-02-28	2.4	2.09	2.10	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.003	0.57	0.0	0.04	16.38	0.00	2.483	4.37	1.28	2.5	97.5	0.0	1.02	0.64	0.64	0.83	3.50	10369	1275	11	0	10	16	0	logfile
✔	8YHD	39287	2025-01-25	2024-02-28	2.93	3.18	3.06	3.2	0.008	1.26	0.0	0.07	18.37	0.01	2.251	9.28	2.02	4.1	95.9	0.0	-2.64	0.69	0.80	2.34	3.2	0.003	0.64	0.0	0.04	19.34	0.00	2.382	10.21	3.22	2.8	97.2	0.0	0.16	0.72	0.67	0.81	2.41	23859	2838	25	88	11	0	0	logfile

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