Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AYB	43984	2025-01-13	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.002	0.51	0.0	0.04	14.11	0.00	2.617	3.42	1.70	1.4	98.6	0.0	1.88	0.32	0.43	0.78	2.01	3347	428	1	0	0	0	0	logfile
✔	9AYC	43985	2025-01-26	2024-03-07	3.23	3.84	3.34	3.7	0.004	0.61	0.0	0.04	11.28	0.00	2.353	0.34	0.00	1.3	98.7	0.0	1.11	0.65	0.84	2.92	3.7	0.003	0.50	0.0	0.04	13.87	0.00	2.437	3.79	1.01	2.1	97.9	0.0	2.96	0.82	0.66	0.85	2.21	23723	1481	1	0	0	0	11947	logfile
✔	9AYF	43990	2025-01-23	2024-03-07	3.6	2.18	—	2.0	0.004	0.67	0.0	0.05	14.71	0.01	2.191	5.85	0.00	2.5	97.5	0.0	0.19	0.79	0.77	2.69	2.0	0.003	0.55	0.0	0.04	15.21	0.00	2.295	4.28	3.71	3.1	96.9	0.0	0.61	0.97	0.80	0.78	2.88	19630	2441	14	0	27	0	0	logfile
✔	9EM7	19812	2025-01-17	2024-03-07	3.6	4.42	3.88	4.0	0.001	0.36	0.0	0.04	8.21	0.00	1.964	4.68	0.15	1.6	98.4	0.0	2.73	0.87	0.74	0.77	4.0	0.004	0.57	0.0	0.04	12.93	0.00	2.323	39.46	1.63	3.6	96.4	0.0	1.79	0.96	0.90	0.83	0.67	57048	6336	8	0	0	0	6176	logfile
✔	9EM8	19813	2025-01-17	2024-03-07	4.1	4.53	4.13	4.3	0.002	0.38	0.0	0.03	9.41	0.00	1.973	6.95	0.44	1.8	98.2	0.0	1.61	0.80	0.62	—	4.3	0.003	0.52	0.0	0.04	12.22	0.00	2.137	44.86	0.00	3.4	96.6	0.0	2.07	3.23	0.86	0.76	—	57040	6336	8	0	0	0	6168	logfile
✔	9AXC	43932	2025-01-15	2024-03-06	4.16	3.88	4.03	3.8	0.005	1.00	0.0	0.06	13.78	0.01	2.243	5.98	0.21	4.2	95.6	0.2	-1.06	0.72	0.77	—	3.8	0.003	0.68	0.0	0.05	13.86	0.00	2.444	9.49	0.00	3.5	96.4	0.1	0.39	0.63	0.73	0.78	—	8677	1079	6	0	2	0	0	logfile
✔	8YLT	39390	2025-01-21	2024-03-06	3.09	3.71	3.14	3.4	0.007	0.89	0.0	0.04	15.91	0.00	2.215	4.00	0.90	2.7	97.3	0.0	0.18	0.76	0.74	2.29	3.4	0.004	0.48	0.0	0.04	15.99	0.00	2.160	2.99	0.63	3.5	96.5	0.0	1.48	0.47	0.77	0.76	2.10	65834	3978	8	0	4	0	32508	logfile
✔	9AXA	43931	2025-01-18	2024-03-06	4.36	3.98	4.18	3.8	0.004	0.98	0.0	0.05	14.52	0.01	2.237	6.73	0.44	4.3	95.6	0.1	-0.95	0.83	0.78	—	3.8	0.003	0.70	0.0	0.04	14.60	0.00	2.403	10.59	0.00	4.4	95.5	0.1	0.28	1.87	0.84	0.79	—	12421	1553	8	0	2	0	0	logfile
✔	9AXF	43966	2025-01-24	2024-03-06	3.5	2.15	—	2.9	0.005	0.78	0.0	0.06	13.15	0.00	2.162	5.78	0.00	2.4	97.6	0.0	0.13	0.80	0.80	4.05	2.9	0.004	0.58	0.0	0.04	14.26	0.00	2.253	4.11	2.89	3.1	96.9	0.0	0.53	0.33	0.81	0.80	3.68	21342	2607	15	0	40	0	0	logfile
✔	9AXL	43969	2025-01-18	2024-03-06	3.3	3.54	3.23	3.6	0.013	1.02	1.0	0.05	16.02	0.01	1.949	8.57	0.55	7.3	92.4	0.3	-1.38	0.70	0.80	2.77	3.6	0.003	0.58	0.0	0.04	16.13	0.00	1.989	5.50	2.29	6.1	93.7	0.2	-0.68	0.89	0.68	0.85	2.39	11748	1555	6	0	7	7	0	logfile
✔	9AXE	43965	2025-01-20	2024-03-06	3.1	3.85	3.22	3.5	0.007	0.72	0.0	0.06	13.29	0.00	1.561	6.46	0.00	2.7	97.3	0.0	-0.63	0.77	0.79	1.92	3.5	0.003	0.55	0.0	0.04	15.26	0.00	2.544	8.49	1.00	2.7	97.3	0.0	0.80	1.79	0.77	0.85	2.46	65632	8106	14	0	0	0	0	logfile
✔	8YLU	39391	2025-01-17	2024-03-06	2.8	3.09	2.94	3.1	0.003	0.51	0.0	0.04	20.36	0.00	2.152	6.37	0.89	3.1	96.9	0.0	-0.03	0.65	0.82	3.48	3.1	0.003	0.53	0.0	0.04	20.43	0.00	2.430	5.17	1.86	3.3	96.7	0.0	0.06	0.21	0.65	0.82	3.13	11441	1308	7	44	1	0	0	logfile
✔	8YL5	39382	2025-01-22	2024-03-05	3.45	3.60	3.48	3.5	0.004	0.63	0.0	0.04	16.54	0.00	2.183	4.76	0.41	2.9	97.1	0.0	0.58	0.79	0.79	1.87	3.5	0.003	0.62	1.0	0.04	16.98	0.00	2.221	5.06	1.50	3.3	96.7	0.0	0.80	0.39	0.79	0.79	1.87	69382	4208	6	0	0	0	34366	logfile
✔	8YKV	39373	2025-01-15	2024-03-05	2.48	2.87	2.63	2.8	0.004	0.63	0.0	0.04	15.42	0.00	1.997	2.62	0.54	1.8	98.2	0.0	1.66	0.63	0.86	4.58	2.8	0.003	0.57	0.0	0.04	16.37	0.00	2.586	5.53	2.15	2.1	97.9	0.0	1.56	0.90	0.61	0.86	4.24	8665	1110	6	0	1	0	0	logfile
✔	8YKX	39375	2025-01-15	2024-03-05	2.69	3.09	2.85	3.0	0.004	0.61	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.003	0.57	0.0	0.04	15.48	0.00	2.590	5.09	1.50	1.9	98.1	0.0	1.58	0.44	0.60	0.84	4.03	8710	1121	6	0	1	0	0	logfile
✔	8S86	19798	2025-01-14	2024-03-05	2.8	3.06	2.71	3.0	0.008	1.18	2.0	0.07	13.44	0.01	2.292	8.93	2.24	6.7	93.3	0.0	-2.43	0.56	0.62	3.43	3.0	0.004	0.72	0.0	0.05	15.81	0.00	2.461	14.74	2.09	4.0	96.0	0.0	-0.13	1.20	0.61	0.65	2.32	6177	785	2	0	0	0	0	logfile
✔	8YKF	39369	2025-01-22	2024-03-05	3.35	3.53	3.41	3.4	0.005	0.78	0.0	0.05	16.25	0.00	2.095	5.00	1.27	2.8	97.1	0.0	-0.06	0.72	0.67	1.83	3.4	0.003	0.51	0.0	0.04	16.61	0.00	2.283	4.17	1.32	2.6	97.3	0.0	1.21	0.71	0.78	0.79	1.59	69382	4208	6	0	0	0	34366	logfile
✔	8YKW	39374	2025-01-15	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.004	0.61	0.0	0.04	15.73	0.00	2.457	4.81	2.37	2.4	97.6	0.0	1.63	0.91	0.62	0.86	3.06	8718	1124	6	0	1	0	0	logfile
✔	9AVL	43908	2025-01-22	2024-03-04	3.8	2.16	—	2.9	0.005	0.67	0.0	0.04	13.11	0.00	2.168	6.25	0.00	2.8	97.2	0.0	-0.08	0.76	0.75	3.09	1.9	0.004	0.57	0.0	0.04	14.86	0.00	2.342	5.27	2.68	3.1	96.9	0.0	0.42	0.40	0.78	0.75	2.91	18143	2247	13	0	24	0	0	logfile
✔	8YKA	39360	2025-01-14	2024-03-04	3.45	3.88	3.69	3.8	0.006	0.81	0.0	0.05	13.49	0.01	2.076	16.04	0.24	8.6	91.3	0.1	-2.55	0.77	0.75	1.64	3.8	0.004	0.64	0.0	0.05	14.58	0.00	2.362	9.18	0.62	6.8	93.2	0.0	-1.28	1.15	0.80	0.82	1.13	49386	6291	9	0	0	0	0	logfile

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