Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RoY	19407	2025-01-15	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.006	0.67	0.0	0.04	15.03	0.00	2.471	6.44	4.82	5.3	94.6	0.1	-0.87	1.02	0.79	0.83	2.67	8294	1174	4	0	1	0	0	logfile
✔	8VLY	43348	2025-01-15	2024-01-12	3.61	3.88	3.58	3.8	0.004	0.55	0.0	0.04	15.20	0.00	2.180	8.34	0.38	4.6	95.4	0.0	1.00	0.64	0.86	1.88	3.8	0.003	0.54	0.0	0.04	15.84	0.00	2.604	5.86	3.38	4.1	95.9	0.0	1.17	0.87	0.65	0.86	1.86	7755	992	5	0	7	0	0	logfile
✔	8VLX	43347	2025-01-24	2024-01-12	2.6	3.36	2.70	3.2	0.004	0.61	0.0	0.04	18.29	0.00	2.160	7.29	3.73	2.4	97.6	0.0	0.86	0.80	0.86	2.91	3.2	0.005	0.68	0.0	0.04	18.08	0.00	2.388	6.62	2.54	2.8	97.2	0.0	2.20	0.42	0.80	0.85	2.49	21239	2710	3	0	1	0	0	logfile
✔	8RoX	19406	2025-01-14	2024-01-12	3.3	4.29	3.46	4.0	0.008	1.02	0.0	0.07	12.77	0.01	2.316	2.97	1.59	5.1	94.9	0.0	-1.84	0.80	0.76	2.56	4.0	0.005	0.66	0.0	0.04	13.35	0.00	2.480	5.56	5.77	4.9	95.1	0.0	-0.68	1.58	0.82	0.80	2.73	7249	1134	4	0	1	0	0	logfile
✔	8RoZ	19408	2025-01-14	2024-01-12	2.7	2.95	2.73	3.0	0.005	0.56	0.0	0.04	17.46	0.00	2.219	5.09	1.06	1.9	98.1	0.0	1.04	0.64	0.85	2.73	3.0	0.004	0.63	0.0	0.04	18.19	0.01	2.592	4.27	3.33	1.8	98.2	0.0	1.49	0.90	0.69	0.87	2.79	6079	751	3	0	0	0	0	logfile
✔	8RNU	19395	2025-01-17	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.77	0.0	0.05	17.91	0.01	2.426	24.31	3.45	10.2	89.8	0.0	-2.07	0.65	0.65	0.39	0.44	10848	1320	12	0	0	0	0	logfile
✔	8XSi	38619	2025-01-14	2024-01-09	2.1	2.13	2.10	1.9	0.003	0.60	0.0	0.05	12.12	0.00	2.136	4.88	0.55	6.4	93.4	0.2	-0.70	0.80	0.79	4.65	1.9	0.003	0.62	0.0	0.05	13.83	0.00	2.541	3.66	1.92	5.9	93.9	0.2	-0.76	0.89	0.83	0.82	4.65	3354	429	4	0	1	0	0	logfile
✔	8XSJ	38620	2025-01-20	2024-01-09	2.61	2.30	2.66	2.1	0.003	0.63	0.0	0.04	13.66	0.01	2.001	6.19	0.10	4.4	95.4	0.2	-0.03	0.75	0.74	3.16	2.1	0.003	0.60	0.0	0.04	15.57	0.01	2.305	5.35	1.24	3.5	96.3	0.2	0.19	0.33	0.80	0.79	2.59	9740	1215	7	0	9	0	0	logfile
✔	8VKH	43316	2025-01-25	2024-01-09	3.63	4.23	3.83	4.0	0.006	1.11	0.0	0.06	13.87	0.01	2.321	2.10	0.16	3.0	97.0	0.0	-1.79	0.79	0.84	1.86	3.9	0.003	0.66	0.0	0.04	15.08	0.00	2.218	6.83	0.89	3.1	96.9	0.0	0.66	0.53	0.80	0.86	1.65	23287	2949	16	0	20	0	0	logfile
✔	8XSE	38617	2025-01-19	2024-01-09	2.5	2.23	2.61	2.0	0.004	0.64	0.0	0.04	17.93	0.01	2.174	6.64	5.41	5.6	94.3	0.1	-0.52	0.79	0.79	3.68	2.0	0.003	0.59	0.0	0.04	17.61	0.00	2.491	4.63	2.65	5.2	94.7	0.1	-0.10	0.31	0.82	0.83	3.73	8120	1065	6	0	1	0	0	logfile
✔	8RN8	19390	2025-01-15	2024-01-09	2.92	3.12	2.96	3.1	0.003	0.50	0.0	0.04	17.76	0.00	1.884	6.27	1.95	3.6	96.3	0.1	0.59	0.67	0.81	2.99	3.1	0.004	0.71	1.0	0.04	17.95	0.00	2.137	5.29	2.24	4.5	95.4	0.1	0.08	0.92	0.68	0.83	3.08	51366	3234	9	0	5	0	25704	logfile
✔	8XSF	38618	2025-01-21	2024-01-09	2.16	2.17	2.18	1.8	0.003	0.59	0.0	0.04	12.92	0.01	2.140	6.66	0.19	3.5	96.4	0.1	0.99	0.73	0.69	2.89	1.9	0.002	0.58	0.0	0.04	15.79	0.00	2.033	4.88	1.60	2.9	97.0	0.1	0.96	1.07	0.79	0.77	2.56	9736	1221	6	0	5	0	0	logfile
✔	8RN6	19388	2025-01-25	2024-01-09	2.82	3.09	2.90	3.1	0.003	0.57	0.0	0.04	17.61	0.00	2.145	5.82	2.21	4.4	95.6	0.1	0.28	0.65	0.86	3.72	3.1	0.003	0.57	0.0	0.04	17.57	0.00	2.188	4.12	2.53	4.4	95.5	0.1	0.29	0.33	0.62	0.86	3.87	23047	1455	3	0	0	0	11505	logfile
✔	8RN7	19389	2025-01-26	2024-01-09	3.09	3.41	3.22	3.4	0.002	0.48	0.0	0.04	16.66	0.00	2.064	6.96	0.00	3.6	96.3	0.1	1.01	0.62	0.79	2.78	3.4	0.003	0.52	0.0	0.04	17.12	0.00	2.145	5.07	2.41	4.1	95.8	0.1	0.58	2.56	0.61	0.80	2.92	24289	1524	6	0	1	0	12184	logfile
✔	8RNC	19394	2025-01-23	2024-01-09	3.52	3.95	3.79	3.8	0.002	0.51	1.0	0.04	16.41	0.00	1.788	8.46	0.33	4.7	95.2	0.1	0.38	0.72	0.73	1.26	3.8	0.003	0.58	0.0	0.04	17.12	0.00	2.269	7.69	1.89	5.0	94.9	0.1	0.02	1.02	0.72	0.77	1.40	71539	4477	9	0	0	0	35901	logfile
✔	8VKJ	43319	2025-01-15	2024-01-09	2.92	3.19	2.94	3.2	0.005	0.63	0.0	0.04	16.09	0.01	2.201	9.71	0.34	4.5	95.4	0.1	0.61	0.62	0.86	4.03	3.2	0.004	0.58	0.0	0.04	15.71	0.00	2.507	8.25	2.06	4.2	95.7	0.1	0.59	0.84	0.66	0.87	3.76	8622	1089	5	0	9	0	0	logfile
✔	8XS3	38613	2025-01-13	2024-01-08	3.46	4.59	3.46	3.9	0.005	0.77	0.0	0.05	13.19	0.02	2.090	16.27	0.00	5.0	95.0	0.0	-3.00	0.91	0.83	2.30	3.9	0.003	0.67	0.0	0.04	14.73	0.00	2.499	10.48	1.71	3.6	96.4	0.0	-0.77	1.07	0.91	0.84	2.37	4118	535	5	0	3	0	0	logfile
✔	8RML	19363	2025-01-26	2024-01-08	3.84	4.20	4.01	4.1	0.004	0.60	0.0	0.04	14.77	0.00	2.198	12.94	0.46	3.7	96.3	0.0	0.77	0.65	0.79	1.28	4.0	0.002	0.63	0.0	0.04	15.68	0.00	2.406	7.55	2.47	3.0	97.0	0.0	1.98	1.38	0.64	0.77	1.01	24454	3088	13	0	0	0	0	logfile
✔	8XS4	38614	2025-01-17	2024-01-08	3.23	3.36	3.21	3.3	0.004	0.80	0.0	0.05	13.90	0.01	2.149	11.69	0.00	7.1	92.9	0.0	-0.41	0.68	0.79	2.51	3.3	0.003	0.70	0.0	0.04	16.13	0.01	2.534	6.63	1.28	6.2	93.8	0.0	0.69	1.56	0.68	0.81	2.29	11132	1392	2	0	0	0	0	logfile
✔	8XRY	38611	2025-01-17	2024-01-08	3.84	3.84	3.74	3.8	0.004	0.74	0.0	0.04	12.99	0.00	2.253	10.68	0.00	9.3	90.5	0.1	-0.26	0.68	0.81	2.38	3.8	0.003	0.72	0.0	0.04	15.40	0.00	2.480	7.75	2.42	7.0	93.0	0.0	0.41	0.43	0.68	0.81	1.16	10616	1392	2	0	0	0	0	logfile

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