Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XRY	38611	2025-01-17	2024-01-08	3.84	3.84	3.74	3.8	0.004	0.74	0.0	0.04	12.99	0.00	2.253	10.68	0.00	9.3	90.5	0.1	-0.26	0.68	0.81	2.38	3.8	0.003	0.72	0.0	0.04	15.40	0.00	2.480	7.75	2.42	7.0	93.0	0.0	0.41	0.43	0.68	0.81	1.16	10616	1392	2	0	0	0	0	logfile
✔	8XS5	38615	2025-01-15	2024-01-08	3.33	3.40	3.21	3.3	0.011	0.88	0.0	0.05	13.49	0.01	2.081	9.41	0.00	6.7	93.2	0.1	-0.34	0.70	0.85	2.61	3.3	0.004	0.63	0.0	0.04	15.23	0.01	2.516	5.45	1.11	5.1	94.9	0.1	1.31	0.40	0.69	0.85	1.86	8705	1088	2	0	0	0	0	logfile
✔	8XRQ	38610	2025-01-13	2024-01-08	4.19	2.23	3.70	1.5	0.006	0.87	0.0	0.05	15.75	0.01	2.322	6.69	0.86	11.0	88.8	0.2	-3.50	0.50	0.46	—	1.6	0.004	0.80	0.0	0.05	13.33	0.01	2.425	12.89	0.00	13.7	86.0	0.2	-3.28	1.24	0.53	0.50	—	3210	407	3	0	0	0	0	logfile
✔	8XS3	38613	2025-01-13	2024-01-08	3.46	4.59	3.46	3.9	0.005	0.77	0.0	0.05	13.19	0.02	2.090	16.27	0.00	5.0	95.0	0.0	-3.00	0.91	0.83	2.30	3.9	0.003	0.67	0.0	0.04	14.73	0.00	2.499	10.48	1.71	3.6	96.4	0.0	-0.77	1.07	0.91	0.84	2.37	4118	535	5	0	3	0	0	logfile
✔	8VJM	43289	2025-01-14	2024-01-07	4.0	4.19	4.05	4.2	0.008	0.82	0.0	0.04	22.67	0.01	2.235	8.60	0.29	6.0	93.8	0.2	0.48	0.66	0.82	—	4.2	0.003	0.72	0.0	0.04	17.67	0.00	2.431	10.08	3.10	6.8	93.1	0.1	0.56	0.97	0.67	0.83	—	6667	808	5	0	3	0	0	logfile
✔	8VJL	43288	2025-01-19	2024-01-07	3.5	3.83	3.70	3.8	0.008	0.79	0.0	0.04	22.66	0.00	2.215	7.08	0.00	5.8	93.7	0.5	0.73	0.68	0.83	2.39	3.8	0.003	0.85	0.0	0.04	16.79	0.00	2.406	5.93	2.06	6.5	93.0	0.5	0.62	0.97	0.67	0.85	2.06	13334	1616	12	0	6	0	0	logfile
✔	8VJC	43280	2025-01-21	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.004	0.67	0.0	0.05	16.25	0.00	2.423	10.93	2.43	8.3	91.5	0.2	-1.61	0.37	0.85	0.82	1.76	13927	1726	5	0	0	0	0	logfile
✔	8VJB	43279	2025-01-22	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.004	0.63	0.0	0.04	17.24	0.00	2.526	10.79	2.73	7.1	92.8	0.1	-1.53	1.58	0.88	0.84	2.07	14688	1824	6	0	0	0	0	logfile
✔	8XQP	38584	2025-01-16	2024-01-05	3.29	2.28	3.48	2.1	0.004	0.71	1.0	0.05	16.65	0.01	2.173	14.37	0.30	3.7	96.3	0.0	0.47	0.71	0.72	2.30	2.1	0.004	0.67	0.0	0.04	17.16	0.00	2.424	12.76	4.78	3.8	96.2	0.0	0.63	0.38	0.71	0.72	1.85	8987	1136	6	0	2	0	0	logfile
✔	8XQR	38586	2025-01-15	2024-01-05	3.2	2.41	3.31	2.1	0.004	0.64	0.0	0.04	15.58	0.00	2.104	13.49	0.00	3.1	96.9	0.0	1.04	0.73	0.76	2.10	2.1	0.003	0.61	0.0	0.04	16.10	0.00	2.537	10.11	4.66	3.2	96.7	0.1	1.17	1.10	0.72	0.75	1.86	8273	1046	6	0	1	0	0	logfile
✔	8ViZ	43274	2025-01-25	2024-01-05	2.63	3.43	—	3.0	0.007	1.05	2.0	0.06	13.27	0.01	2.286	1.80	0.08	2.9	97.1	0.0	-1.70	0.88	0.91	3.65	2.9	0.003	0.62	0.0	0.04	14.50	0.00	2.234	4.25	0.73	2.5	97.5	0.0	1.03	0.35	0.88	0.91	3.10	23274	2955	14	0	20	0	0	logfile
✔	8XQL	38580	2025-01-15	2024-01-05	2.99	2.28	3.05	2.0	0.005	0.63	0.0	0.04	15.56	0.00	2.156	14.24	0.00	4.2	95.7	0.1	0.98	0.78	0.78	2.64	2.0	0.005	0.67	0.0	0.04	16.46	0.00	2.494	10.65	2.98	3.9	96.0	0.1	0.89	1.09	0.77	0.79	2.38	8368	1052	6	0	3	0	0	logfile
✔	8XQS	38587	2025-01-15	2024-01-05	3.3	2.38	3.33	2.1	0.004	0.60	0.0	0.04	15.23	0.01	2.078	14.68	0.31	3.6	96.4	0.0	0.32	0.75	0.75	2.02	2.2	0.004	0.62	0.0	0.04	15.78	0.00	2.516	11.01	4.22	3.1	96.9	0.0	0.57	0.35	0.74	0.74	1.78	8867	1122	6	0	2	0	0	logfile
✔	8XQo	38583	2025-01-16	2024-01-05	2.77	2.28	2.96	2.0	0.003	0.57	0.0	0.04	15.54	0.00	1.853	11.79	0.10	3.0	97.0	0.0	1.14	0.78	0.80	3.08	2.0	0.003	0.57	0.0	0.04	16.14	0.00	2.569	8.66	3.37	3.0	97.0	0.0	1.02	0.30	0.79	0.80	2.82	8958	1132	6	0	2	0	0	logfile
✔	8XQT	38588	2025-01-16	2024-01-05	2.94	2.26	3.07	2.0	0.003	0.59	0.0	0.04	15.34	0.00	2.168	16.18	0.21	3.1	96.9	0.0	0.33	0.74	0.74	2.16	2.0	0.004	0.63	0.0	0.04	16.10	0.00	2.369	10.90	3.80	2.7	97.3	0.0	0.11	1.11	0.76	0.76	2.04	8897	1125	6	0	2	0	0	logfile
✔	8XQN	38582	2025-01-16	2024-01-05	3.05	2.30	3.12	2.0	0.004	0.62	0.0	0.04	15.73	0.00	2.075	14.89	0.00	3.6	96.4	0.0	1.02	0.76	0.77	2.27	2.0	0.004	0.63	0.0	0.04	16.15	0.00	2.532	9.99	3.47	3.5	96.5	0.0	0.90	0.31	0.76	0.78	2.17	8976	1135	6	0	2	0	0	logfile
✔	8XPY	38563	2025-01-13	2024-01-04	3.63	3.53	3.62	1.6	0.004	0.79	0.0	0.05	29.42	0.00	2.217	10.44	4.39	10.1	89.9	0.0	-4.21	0.90	0.79	2.54	1.5	0.004	0.89	0.0	0.05	15.66	0.00	2.343	13.33	3.14	13.8	86.2	0.0	-2.24	2.12	0.92	0.84	2.10	4568	546	7	0	25	0	0	logfile
✔	8XQ9	38570	2025-01-17	2024-01-04	3.77	2.79	3.79	2.7	0.003	0.71	0.0	0.04	14.17	0.01	2.293	4.12	4.48	2.1	97.9	0.0	-1.10	0.68	0.71	0.75	2.8	0.003	0.76	0.0	0.04	16.29	0.00	2.330	12.83	3.71	2.2	97.8	0.0	2.03	0.58	0.70	0.73	0.76	10672	1366	2	0	0	0	0	logfile
✔	8XPS	38560	2025-01-13	2024-01-04	3.22	3.24	3.25	1.5	0.005	0.85	1.0	0.06	20.48	0.00	2.208	5.24	4.58	9.0	90.6	0.4	-4.49	0.90	0.82	3.01	1.5	0.004	0.91	0.0	0.05	15.63	0.01	2.472	9.80	3.12	8.9	91.1	0.0	-1.95	1.32	0.92	0.87	2.79	4568	546	7	0	24	0	0	logfile
✔	8RM0	19347	2025-01-21	2024-01-04	3.8	2.58	3.83	2.3	0.004	0.72	0.0	0.05	13.70	0.01	2.251	5.19	0.19	3.4	96.6	0.0	-0.81	0.76	0.76	2.77	2.3	0.004	0.80	0.0	0.05	16.38	0.00	2.452	6.60	4.73	6.0	93.9	0.0	-0.88	0.70	0.77	0.77	2.65	16311	2088	18	0	48	0	0	logfile

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