Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XQ7	38568	2025-01-21	2024-01-04	3.15	2.43	3.19	3.1	0.005	0.79	0.0	0.05	13.36	0.01	2.261	5.76	5.64	4.2	95.8	0.0	-1.41	0.78	0.80	1.57	2.8	0.003	0.71	0.0	0.04	16.29	0.00	2.411	11.23	4.30	4.5	95.5	0.0	1.42	0.68	0.79	0.81	1.55	16430	2082	4	0	2	0	0	logfile
✔	8XQ8	38569	2025-01-15	2024-01-04	3.35	2.39	3.39	2.0	0.007	1.24	0.0	0.06	17.54	0.01	2.255	7.43	0.77	2.7	97.3	0.0	-1.52	0.68	0.76	1.59	2.9	0.003	0.68	0.0	0.04	18.02	0.00	2.535	11.56	4.31	3.0	97.0	0.0	1.59	1.62	0.69	0.78	1.49	8319	1051	2	0	1	0	0	logfile
✔	8ViF	43260	2025-01-13	2024-01-04	3.1	3.32	3.03	3.3	0.004	0.61	0.0	0.04	13.83	0.01	2.184	5.82	0.00	3.1	96.9	0.0	0.05	0.70	0.84	3.63	3.3	0.005	0.59	0.0	0.05	14.87	0.00	2.524	5.52	1.36	4.5	95.5	0.0	-0.39	0.99	0.69	0.85	3.54	3326	427	4	0	1	0	0	logfile
✔	8XQ9	38570	2025-01-17	2024-01-04	3.77	2.79	3.79	2.7	0.003	0.71	0.0	0.04	14.17	0.01	2.293	4.12	4.48	2.1	97.9	0.0	-1.10	0.68	0.71	0.75	2.8	0.003	0.76	0.0	0.04	16.29	0.00	2.330	12.83	3.71	2.2	97.8	0.0	2.03	0.58	0.70	0.73	0.76	10672	1366	2	0	0	0	0	logfile
✔	8XQA	38571	2025-01-17	2024-01-04	3.54	2.60	3.54	2.0	0.005	0.76	0.0	0.05	15.00	0.01	2.268	5.07	6.62	2.0	98.0	0.0	-1.20	0.73	0.75	1.12	2.0	0.003	0.67	0.0	0.04	17.04	0.00	2.560	10.70	5.49	2.1	97.9	0.0	2.35	0.51	0.73	0.75	1.02	10602	1356	2	0	0	0	0	logfile
✔	8XQ4	38565	2025-01-15	2024-01-04	3.21	2.33	3.21	3.1	0.003	0.74	0.0	0.05	12.52	0.01	2.267	3.69	3.90	4.0	96.0	0.0	-1.41	0.70	0.77	1.54	2.0	0.003	0.66	0.0	0.04	15.99	0.00	2.453	8.09	4.01	4.1	95.9	0.0	1.51	1.23	0.71	0.78	1.52	8237	1044	1	0	0	0	0	logfile
✔	8RM0	19347	2025-01-21	2024-01-04	3.8	2.58	3.83	2.3	0.004	0.72	0.0	0.05	13.70	0.01	2.251	5.19	0.19	3.4	96.6	0.0	-0.81	0.76	0.76	2.77	2.3	0.004	0.80	0.0	0.05	16.38	0.00	2.452	6.60	4.73	6.0	93.9	0.0	-0.88	0.70	0.77	0.77	2.65	16311	2088	18	0	48	0	0	logfile
✔	8Vi2	43246	2025-01-14	2024-01-03	3.1	3.54	3.18	3.5	0.003	0.48	0.0	0.04	12.42	0.00	2.029	6.59	0.00	3.7	96.3	0.0	0.67	0.62	0.86	5.04	3.5	0.003	0.54	0.0	0.04	13.69	0.00	2.590	4.77	0.52	2.6	97.4	0.0	3.40	0.86	0.59	0.87	4.32	7382	924	3	0	0	0	0	logfile
✔	8Vi3	43247	2025-01-14	2024-01-03	2.9	3.36	3.11	3.3	0.002	0.44	0.0	0.04	12.32	0.00	2.186	4.59	0.00	1.2	98.8	0.0	2.50	0.69	0.87	5.29	3.3	0.002	0.47	0.0	0.04	14.71	0.00	2.494	3.78	0.78	1.7	98.3	0.0	2.31	0.33	0.64	0.89	4.41	7359	924	3	0	0	0	0	logfile
✔	8Vi4	43248	2025-01-14	2024-01-03	3.1	3.45	3.13	3.4	0.003	0.46	0.0	0.04	12.37	0.00	2.132	4.99	0.13	1.7	98.3	0.0	2.48	0.70	0.88	4.44	3.4	0.003	0.48	0.0	0.04	13.60	0.00	2.635	3.37	1.17	2.0	98.0	0.0	3.08	0.29	0.64	0.89	3.71	7359	924	3	0	0	0	0	logfile
✔	8ViB	43256	2025-01-13	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.003	0.76	0.0	0.04	5.70	0.00	2.472	5.79	0.00	10.6	89.0	0.5	-1.94	3.62	0.49	0.74	—	4421	888	6	0	7	0	0	logfile
✔	8Vi5	43249	2025-01-14	2024-01-03	3.2	3.48	3.25	3.5	0.003	0.49	0.0	0.04	12.93	0.00	1.764	4.66	0.00	1.5	98.5	0.0	2.79	0.63	0.85	3.44	3.5	0.003	0.51	0.0	0.04	14.08	0.00	2.664	5.19	0.65	2.1	97.9	0.0	2.61	1.04	0.59	0.85	2.95	7359	924	3	0	0	0	0	logfile
✔	8XP2	38548	2025-01-25	2024-01-02	3.2	3.58	3.18	3.1	0.003	0.79	1.0	0.04	22.01	0.01	2.012	5.90	0.05	4.3	95.6	0.1	-2.56	0.84	0.84	2.39	3.1	0.003	0.63	0.0	0.04	22.26	0.00	2.097	8.83	2.55	4.5	95.4	0.1	-0.28	0.54	0.85	0.89	2.03	76494	4957	40	1740	4	0	0	logfile
✔	8XoS	38539	2025-01-17	2024-01-02	3.2	3.77	3.08	3.5	0.008	0.90	0.0	0.06	12.89	0.01	2.197	6.31	0.72	4.6	95.4	0.0	-0.80	0.73	0.84	3.37	3.4	0.003	0.71	0.0	0.04	14.67	0.00	2.518	7.49	1.54	2.7	97.3	0.0	0.71	1.30	0.73	0.84	2.80	8919	1136	6	0	2	0	0	logfile
✔	8XP3	38549	2025-01-26	2024-01-02	3.4	3.62	3.54	3.1	0.004	0.83	1.0	0.05	21.84	0.01	2.083	6.55	0.25	4.4	95.5	0.1	-2.36	0.81	0.82	1.85	3.1	0.004	0.68	0.0	0.04	22.27	0.01	1.992	11.28	2.66	4.5	95.4	0.1	-0.33	0.74	0.82	0.87	1.67	80435	5469	41	1740	4	0	0	logfile
✔	8XoW	38542	2025-01-19	2024-01-02	3.32	4.19	3.43	3.9	0.004	0.78	0.0	0.04	18.34	0.01	2.094	18.47	0.98	8.5	91.0	0.5	-0.27	0.70	0.87	1.38	3.9	0.004	0.83	0.0	0.04	18.63	0.01	2.414	12.45	5.62	8.2	91.4	0.5	-0.36	0.31	0.70	0.87	1.27	62334	7962	36	0	0	0	0	logfile
✔	8XoR	38538	2025-01-17	2024-01-02	3.0	3.68	2.90	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.68	0.0	0.04	14.58	0.00	2.468	5.19	1.30	2.8	97.2	0.0	1.22	1.65	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8XoP	38537	2025-01-23	2024-01-02	2.8	3.94	2.89	3.5	0.005	0.69	0.0	0.04	12.47	0.01	2.120	10.63	0.00	2.0	97.9	0.0	1.41	0.85	0.87	2.82	3.5	0.004	0.84	0.0	0.04	16.26	0.00	2.294	9.82	2.27	1.6	98.4	0.0	1.69	0.98	0.86	0.89	2.73	19740	2562	28	0	14	0	0	logfile
✔	8XoH	38529	2025-01-15	2024-01-01	3.2	3.06	3.20	3.2	0.003	0.56	0.0	0.04	15.16	0.00	2.215	4.05	0.21	2.6	97.4	0.0	0.74	0.60	0.81	3.13	3.2	0.004	0.61	0.0	0.04	16.64	0.00	2.355	6.34	2.50	2.6	97.4	0.0	0.98	1.19	0.57	0.81	2.34	8809	1116	5	0	0	0	0	logfile
✔	8VHF	43236	2025-01-15	2024-01-01	3.51	3.98	3.52	3.9	0.004	0.82	0.0	0.04	17.72	0.00	2.237	9.63	0.34	3.7	96.3	0.0	-0.22	0.66	0.79	1.26	3.9	0.004	0.71	0.0	0.04	17.70	0.00	2.405	10.72	4.93	4.4	95.6	0.0	0.19	0.30	0.68	0.81	1.16	8299	1057	6	0	1	0	0	logfile

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