Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Xoo	38536	2025-01-13	2024-01-01	1.84	2.57	3.02	2.8	0.002	0.55	0.0	0.04	14.65	0.00	2.063	8.76	0.02	3.7	96.2	0.1	1.08	0.80	0.80	2.08	2.2	0.003	0.67	0.0	0.04	17.40	0.00	1.972	6.96	1.81	3.9	96.0	0.1	1.47	2.01	0.89	0.89	2.40	47229	6018	27	0	43	0	0	logfile
✔	8Xoi	38530	2025-01-15	2024-01-01	3.2	2.88	2.44	3.1	0.003	0.54	0.0	0.04	15.22	0.00	2.211	4.54	0.32	2.6	97.4	0.0	0.82	0.59	0.80	3.11	3.1	0.003	0.54	0.0	0.04	16.28	0.00	2.565	5.23	2.64	2.5	97.5	0.0	1.31	0.44	0.59	0.82	2.65	8753	1115	5	0	0	0	0	logfile
✔	8XoJ	38531	2025-01-15	2024-01-01	3.1	3.41	3.14	3.3	0.003	0.56	0.0	0.04	15.11	0.00	2.311	3.72	0.32	2.7	97.3	0.0	1.17	0.66	0.81	3.58	3.3	0.004	0.60	0.0	0.04	16.49	0.00	2.513	5.21	2.42	2.7	97.3	0.0	1.31	1.15	0.64	0.81	2.88	8785	1117	5	0	0	0	0	logfile
✔	8XoN	38535	2025-01-13	2024-01-01	1.96	2.51	3.08	2.2	0.003	0.57	0.0	0.04	14.06	0.00	2.025	7.97	0.00	4.1	95.7	0.2	0.94	0.79	0.81	2.16	2.2	0.003	0.67	0.0	0.04	17.10	0.00	2.009	6.66	2.08	4.5	95.4	0.1	1.25	0.69	0.88	0.88	2.18	47409	6044	27	0	43	0	0	logfile
✔	8VHF	43236	2025-01-15	2024-01-01	3.51	3.98	3.52	3.9	0.004	0.82	0.0	0.04	17.72	0.00	2.237	9.63	0.34	3.7	96.3	0.0	-0.22	0.66	0.79	1.26	3.9	0.004	0.71	0.0	0.04	17.70	0.00	2.405	10.72	4.93	4.4	95.6	0.0	0.19	0.30	0.68	0.81	1.16	8299	1057	6	0	1	0	0	logfile
✔	8XoB	38525	2025-01-13	2023-12-31	3.15	3.40	3.18	3.4	0.005	0.80	0.0	0.04	12.87	0.01	2.358	3.44	0.00	4.2	95.8	0.0	-1.77	0.62	0.83	2.37	3.4	0.003	0.69	0.0	0.04	14.59	0.01	2.585	2.41	1.67	3.7	96.3	0.0	2.24	0.30	0.60	0.84	1.08	2858	387	1	0	0	0	0	logfile
✔	8Xo9	38523	2025-01-13	2023-12-31	3.2	3.60	3.34	3.6	0.004	0.74	0.0	0.04	14.59	0.01	2.284	5.40	0.00	2.6	97.4	0.0	1.96	0.52	0.81	2.01	3.6	0.004	0.74	0.0	0.04	15.56	0.01	2.581	5.40	3.30	2.6	97.4	0.0	2.31	1.29	0.49	0.80	1.70	2908	392	2	0	1	0	0	logfile
✔	8RKT	19282	2025-01-19	2023-12-30	2.35	2.45	2.50	2.5	0.006	0.96	0.0	0.07	22.00	0.01	2.046	3.02	0.00	1.9	98.1	0.0	-0.24	0.63	0.85	5.74	2.5	0.004	0.60	0.0	0.04	23.20	0.00	1.932	6.00	0.94	1.2	98.8	0.0	2.12	0.80	0.65	0.87	4.50	13794	853	14	312	3	323	0	logfile
✔	8RKV	19284	2025-01-21	2023-12-30	3.11	3.27	3.12	3.2	0.006	0.95	0.0	0.06	22.22	0.01	2.013	5.40	1.94	6.0	94.0	0.0	-1.75	0.59	0.67	2.07	3.2	0.006	0.83	0.0	0.05	23.63	0.01	1.868	13.23	3.15	5.8	94.2	0.0	-0.69	0.93	0.66	0.75	1.94	16466	1600	12	176	2	0	0	logfile
✔	8VH4	43234	2025-01-21	2023-12-30	4.1	4.42	4.04	4.1	0.006	1.01	9.0	0.06	14.89	0.01	2.031	8.95	0.00	9.8	90.2	0.0	-4.65	0.81	0.71	—	4.1	0.003	0.67	0.0	0.04	13.09	0.00	2.006	8.47	0.00	7.0	93.0	0.0	-0.93	0.60	0.85	0.80	—	17266	2406	5	1	3	0	0	logfile
✔	8VH1	43231	2025-01-14	2023-12-30	4.08	4.34	4.10	4.2	0.016	0.96	0.0	0.05	13.54	0.01	1.998	9.24	0.04	10.6	89.1	0.3	-2.16	0.75	0.77	—	4.2	0.005	0.67	0.0	0.04	13.93	0.00	2.313	7.45	0.00	11.6	88.2	0.2	-1.95	0.45	0.77	0.78	—	46047	2988	12	0	0	0	22827	logfile
✔	8XNH	38504	2025-01-20	2023-12-30	2.3	3.16	2.35	2.9	0.004	0.66	0.0	0.05	12.74	0.00	2.164	3.08	0.00	4.0	96.0	0.0	-0.59	0.76	0.75	3.88	2.9	0.003	0.63	0.0	0.05	15.40	0.00	2.449	4.07	2.12	3.7	96.3	0.0	0.24	0.55	0.81	0.86	3.19	15706	2031	12	0	6	0	0	logfile
✔	8VH2	43232	2025-01-15	2023-12-30	4.31	4.52	4.30	4.5	0.003	0.64	0.0	0.04	13.28	0.00	1.953	5.69	0.00	7.8	92.0	0.2	-1.98	0.64	0.66	—	4.4	0.003	0.64	0.0	0.04	13.73	0.00	2.264	7.25	0.04	7.5	92.3	0.2	-2.08	1.27	0.67	0.72	—	46227	2988	12	0	0	0	22914	logfile
✔	8XN4	38497	2025-01-22	2023-12-29	2.34	2.61	2.44	2.2	0.005	0.81	1.0	0.05	18.21	0.01	2.200	11.08	3.23	2.5	97.4	0.1	1.34	0.86	0.87	3.46	2.2	0.004	0.77	0.0	0.04	18.11	0.00	2.458	9.31	3.57	2.7	97.3	0.0	1.94	0.44	0.87	0.87	2.93	19173	2506	14	0	0	0	0	logfile
✔	8XN9	38499	2025-01-23	2023-12-29	1.99	2.10	2.03	2.1	0.004	0.76	0.0	0.09	12.68	0.01	2.220	3.19	0.00	2.9	97.1	0.0	0.40	0.71	0.87	5.61	2.1	0.004	0.67	0.0	0.05	14.94	0.00	2.517	2.75	1.08	3.1	96.9	0.0	0.63	0.81	0.71	0.88	5.47	19473	2552	12	0	6	0	0	logfile
✔	8XNG	38503	2025-01-17	2023-12-29	3.56	3.95	3.59	3.8	0.008	0.89	0.0	0.05	14.28	0.01	2.146	17.51	0.00	10.2	89.8	0.0	-1.58	0.60	0.75	1.94	3.8	0.003	0.72	0.0	0.04	16.47	0.00	2.495	10.12	1.92	5.8	94.2	0.0	0.22	1.18	0.59	0.73	1.63	10922	1366	2	0	0	0	0	logfile
✔	8XN3	38496	2025-01-17	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.004	0.79	0.0	0.05	17.06	0.01	2.276	12.99	2.45	3.7	96.3	0.0	0.24	1.12	0.73	0.72	2.51	6505	791	3	0	7	0	0	logfile
✔	8XMT	38488	2025-01-26	2023-12-28	3.31	2.36	3.26	2.2	0.004	0.64	1.0	0.05	13.24	0.01	2.202	10.21	0.11	4.0	95.7	0.3	0.46	0.68	0.72	2.73	2.1	0.004	0.67	0.0	0.05	15.62	0.00	2.430	8.06	3.41	4.5	95.4	0.0	0.10	0.66	0.78	0.80	2.61	24217	3045	6	0	27	0	0	logfile
✔	8XN2	38495	2025-01-17	2023-12-28	2.79	2.29	2.72	2.9	0.004	0.63	0.0	0.06	14.75	0.01	2.206	7.92	0.00	3.3	96.7	0.0	1.32	0.63	0.64	1.62	2.0	0.005	1.17	1.0	0.06	16.62	0.01	2.271	14.52	1.44	3.3	96.7	0.0	0.77	0.76	0.74	0.74	1.44	6527	791	4	0	9	0	0	logfile
✔	8XMW	38490	2025-01-17	2023-12-28	2.94	3.14	2.99	3.1	0.005	0.66	0.0	0.05	13.87	0.00	2.047	11.23	0.30	5.1	94.7	0.2	-0.58	0.55	0.63	3.55	3.1	0.005	0.62	0.0	0.04	16.66	0.00	2.190	7.73	2.92	5.8	94.1	0.2	-0.37	1.20	0.65	0.83	3.52	9538	1212	13	0	18	0	0	logfile

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