Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VGL	43204	2025-01-20	2023-12-27	2.6	3.17	2.55	3.0	0.003	0.54	0.0	0.04	13.65	0.01	2.239	3.99	0.62	5.2	94.6	0.2	-1.44	0.74	0.85	3.20	2.9	0.003	0.68	0.0	0.04	15.71	0.00	2.475	5.71	0.91	3.0	97.0	0.0	1.09	0.77	0.73	0.84	2.69	15622	1960	8	0	0	0	0	logfile
✔	8VGo	43216	2025-01-16	2023-12-27	2.6	3.19	2.67	3.0	0.003	0.68	0.0	0.04	13.68	0.01	2.309	2.92	0.19	4.8	94.7	0.5	-0.28	0.72	0.84	3.99	3.0	0.006	0.77	0.0	0.05	16.00	0.01	2.586	7.04	2.04	3.1	96.9	0.0	1.29	1.13	0.71	0.83	4.03	9148	1206	6	0	0	0	0	logfile
✔	8VGN	43212	2025-01-16	2023-12-27	2.5	3.15	2.50	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.71	0.0	0.04	15.65	0.00	2.435	5.93	0.78	1.9	98.1	0.0	1.30	3.03	0.70	0.84	3.86	9150	1204	6	0	0	0	0	logfile
✔	8VGi	43201	2025-01-23	2023-12-27	2.7	3.68	2.86	3.3	0.011	1.16	0.0	0.07	13.30	0.01	2.029	4.48	0.70	6.5	93.2	0.3	-0.80	0.87	0.84	3.19	3.3	0.005	0.88	0.0	0.05	15.67	0.01	2.465	8.68	2.75	4.2	95.8	0.0	0.16	1.61	0.83	0.86	2.44	20482	2668	16	0	0	26	0	logfile
✔	8XMP	38485	2025-01-25	2023-12-27	3.11	3.33	3.15	3.3	0.003	0.52	0.0	0.04	13.86	0.00	2.025	9.42	0.12	3.4	96.5	0.1	-0.51	0.68	0.77	2.24	3.3	0.004	0.73	0.0	0.04	15.86	0.00	2.254	8.22	2.38	4.3	95.6	0.1	-0.41	3.26	0.73	0.84	2.19	22949	2972	15	0	41	0	0	logfile
✔	8XMF	38475	2025-01-14	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.003	0.65	0.0	0.04	16.42	0.00	1.864	8.87	5.63	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.93	4929	636	4	0	13	0	0	logfile
✔	8XMJ	38479	2025-01-13	2023-12-27	4.18	4.63	4.20	4.4	0.004	0.66	0.0	0.05	24.61	0.00	1.932	8.98	0.00	5.2	94.8	0.0	2.35	0.56	0.76	—	4.5	0.003	0.58	0.0	0.04	13.16	0.00	1.966	8.72	0.00	5.4	94.5	0.2	2.04	0.98	0.63	0.81	—	4314	648	4	0	11	0	0	logfile
✔	8VGP	43220	2025-01-14	2023-12-27	2.7	3.48	2.69	3.2	0.010	1.02	0.0	0.06	14.34	0.02	2.148	2.04	0.91	5.0	94.8	0.2	-0.76	0.91	0.90	4.54	3.2	0.004	0.74	0.0	0.04	14.93	0.00	2.278	3.37	1.63	3.1	96.7	0.2	0.52	1.18	0.87	0.88	4.20	5046	648	6	0	1	43	0	logfile
✔	8VGM	43208	2025-01-20	2023-12-27	2.6	3.12	2.59	2.9	0.003	0.59	0.0	0.04	13.75	0.01	2.195	3.07	0.11	4.6	95.3	0.1	-1.27	0.73	0.86	3.18	2.9	0.004	0.71	0.0	0.04	16.13	0.00	2.379	7.79	1.70	2.6	97.3	0.1	1.32	1.21	0.73	0.86	2.67	15626	1962	8	0	0	0	0	logfile
✔	8XMK	38480	2025-01-18	2023-12-27	3.03	3.24	3.07	3.2	0.004	0.53	0.0	0.04	13.98	0.00	2.186	10.49	0.16	3.7	96.3	0.0	-0.74	0.70	0.81	2.70	3.2	0.003	0.55	0.0	0.04	16.05	0.00	2.206	8.20	2.83	4.1	95.9	0.0	-0.56	1.19	0.70	0.83	2.09	11815	1553	6	0	23	0	0	logfile
✔	8VGH	43200	2025-01-23	2023-12-27	2.9	4.11	3.07	3.9	0.011	0.94	0.0	0.05	12.79	0.01	2.239	6.69	0.13	7.1	92.4	0.5	-1.33	0.82	0.82	3.38	3.9	0.004	0.82	0.0	0.05	15.47	0.01	2.407	9.28	2.27	3.8	96.2	0.0	0.10	0.77	0.82	0.82	2.70	20472	2668	12	0	0	0	0	logfile
✔	8XM6	38465	2025-01-14	2023-12-27	3.48	3.62	3.58	3.7	0.004	0.68	0.0	0.04	23.94	0.00	2.004	8.27	0.00	4.1	95.9	0.0	2.70	0.57	0.77	1.78	3.7	0.003	0.58	0.0	0.04	15.79	0.00	2.100	8.08	3.28	2.7	97.3	0.0	2.70	0.47	0.56	0.80	1.88	5205	645	4	0	13	0	0	logfile
✔	8VGJ	43202	2025-01-23	2023-12-27	2.5	3.57	2.62	3.1	0.011	1.20	0.0	0.08	13.49	0.01	2.128	3.54	1.57	6.2	93.5	0.3	-1.25	0.86	0.82	3.93	3.2	0.004	0.82	0.0	0.05	15.35	0.01	2.144	6.53	1.57	3.4	96.6	0.0	0.21	0.72	0.83	0.87	3.04	20579	2672	21	0	0	99	0	logfile
✔	8XM7	38466	2025-01-22	2023-12-27	4.91	3.77	4.50	7.7	0.007	1.01	0.0	0.05	14.71	0.01	2.009	51.04	0.00	11.1	88.9	0.0	-2.89	0.86	0.80	—	7.7	0.003	0.78	0.0	0.05	14.81	0.01	2.002	21.20	0.05	6.4	93.6	0.0	-1.28	0.57	0.82	0.57	—	17190	2123	4	0	2	0	0	logfile
✔	8XMG	38476	2025-01-26	2023-12-27	2.9	2.26	2.89	2.0	0.004	0.61	0.0	0.06	12.81	0.01	2.216	6.94	0.11	3.7	96.3	0.0	0.23	0.78	0.79	3.45	2.0	0.005	0.65	0.0	0.05	15.67	0.00	2.157	7.17	2.65	3.6	96.4	0.0	0.28	1.02	0.78	0.81	3.19	24476	3062	6	0	38	0	0	logfile
✔	8VGT	43224	2025-01-14	2023-12-27	2.9	3.22	2.90	3.2	0.011	1.30	1.0	0.07	10.51	0.01	2.374	2.03	0.70	3.9	95.6	0.5	-0.41	0.68	0.77	5.20	3.2	0.005	0.69	0.0	0.05	14.33	0.00	2.535	4.28	3.26	2.9	97.1	0.0	-0.41	1.15	0.64	0.78	4.72	4714	629	4	0	5	0	0	logfile
✔	8XM5	38463	2025-01-26	2023-12-27	2.61	2.22	2.60	2.1	0.004	0.64	3.0	0.05	12.96	0.01	2.026	8.16	0.11	4.3	95.6	0.1	0.14	0.78	0.79	3.41	2.0	0.004	0.66	0.0	0.05	15.91	0.00	2.381	7.49	2.66	4.9	95.1	0.0	0.25	1.28	0.79	0.80	3.05	24226	3047	6	0	27	0	0	logfile
✔	8XMQ	38486	2025-01-18	2023-12-27	3.21	3.45	3.24	3.4	0.004	0.56	0.0	0.04	13.77	0.00	2.074	9.10	0.15	4.7	95.3	0.1	-0.24	0.67	0.77	2.29	3.4	0.003	0.57	0.0	0.04	16.08	0.00	2.249	8.51	2.73	4.8	95.1	0.1	-0.29	1.33	0.67	0.82	2.03	12950	1657	12	0	25	0	0	logfile
✔	8VGK	43203	2025-01-23	2023-12-27	2.4	3.44	2.61	3.1	0.005	1.04	0.0	0.06	13.84	0.01	2.099	3.12	0.65	7.0	92.3	0.6	-1.00	0.84	0.81	4.28	3.2	0.004	0.83	0.0	0.05	15.21	0.01	2.431	7.02	1.09	5.4	94.6	0.0	0.32	0.85	0.81	0.86	3.08	20567	2672	20	0	0	135	0	logfile
✔	8XMA	38469	2025-01-14	2023-12-27	2.65	3.10	2.82	3.1	0.004	0.63	0.0	0.04	23.46	0.00	1.957	7.89	0.00	1.4	98.6	0.0	3.44	0.54	0.76	3.01	3.1	0.002	0.46	0.0	0.04	16.74	0.00	1.961	6.47	3.67	1.0	99.0	0.0	3.90	0.59	0.54	0.78	2.65	4858	601	4	0	14	0	0	logfile

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